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RLE
•
reset
2
votes
1
reply
2.0k
views
deseq2 RLE normalization
RLE
normalization
deseq2
updated 2.6 years ago by
ATpoint
★ 5.0k • written 2.6 years ago by
SH
▴ 10
0
votes
1
reply
1.5k
views
Resources to learn about s4 object extension/inheritance, custom print methods, and new operations
S4
Rcpp
InteractionSet
IRanges
Rle
updated 5.4 years ago by
Aaron Lun
★ 29k • written 5.4 years ago by
lklei001
• 0
0
votes
1
reply
2.5k
views
RLE plot of DESeq2 normalisation / extract matrix of normalised counts from DESeqDataSet
deseq2
RLE
updated 5.7 years ago by
Michael Love
43k • written 5.7 years ago by
f_pardow
• 0
0
votes
2
replies
1.6k
views
Error: invalid class "VRanges" object
variantannotation
VRanges
R
Rle
updated 7.3 years ago by
Valerie Obenchain
★ 6.8k • written 7.3 years ago by
Jayendra Shinde
• 0
0
votes
0
replies
1.4k
views
Avoid rotating vector when doing arithmetic on different length IRanges RleList entries
iranges
s4vectors
rle
rlelist
7.3 years ago
endrebak85
▴ 40
1
vote
1
reply
3.9k
views
What does the relative-log expression normalization mean in the deseq2 wrapper function ?
rle
deseq2
normalization
updated 7.4 years ago by
Michael Love
43k • written 7.4 years ago by
Aurora
▴ 20
1
vote
1
reply
1.5k
views
Subsetting Rle with ORF-sequence-positions by the 3 frames
Rle
Big data
coverageByTranscript
7.5 years ago
hauken_heyken
▴ 80
7
votes
4
replies
2.1k
views
From RleList to RleArray
delayedarray
rlelist
rle
updated 8.0 years ago by
Peter Hickey
▴ 760 • written 8.0 years ago by
davide risso
▴ 980
2
votes
4
replies
2.0k
views
Generic functions for DataFrames of Rle objects ?
DataFrame
Rle
generic
expression table
updated 2.3 years ago by
Hervé Pagès
16k • written 8.4 years ago by
Charles Plessy
▴ 180
0
votes
3
replies
2.2k
views
Efficiently construct GRanges/IRanges from Rle vector
Rle
granges
iranges
9.1 years ago
my4
▴ 10
0
votes
1
reply
2.0k
views
Efficient coverage calculation with RleList and GRanges
granges
Rle
coverage
View
mean
updated 9.3 years ago by
Michael Lawrence
★ 11k • written 9.3 years ago by
Christian Ruckert
▴ 170
6
votes
3
replies
3.4k
views
how does coverage() works
biostrings
coverage
rle
iranges
9.4 years ago
likeeatingpizza
▴ 10
0
votes
1
reply
1.8k
views
extract RLE normalized table
rle
normalization
table
updated 10.0 years ago by
Steve Lianoglou
★ 13k • written 10.0 years ago by
aiko
• 0
3
votes
7
replies
2.6k
views
Add up RLEs that are in lists?
RLE
GenomicFeatures
rnaseq
updated 10.6 years ago by
Hervé Pagès
16k • written 10.6 years ago by
gen
▴ 30
2
votes
6
replies
3.4k
views
Shrink or Expand RLE
RLE
iranges
granges
coverage
updated 10.6 years ago by
Martin Morgan
25k • written 10.6 years ago by
gen
▴ 30
2
votes
4
replies
2.4k
views
summing integer RLE
rle
list
irange
grangeslist
updated 10.6 years ago by
Chris Seidel
▴ 80 • written 10.6 years ago by
gen
▴ 30
1
vote
2
replies
1.5k
views
Summary statistics of RleListViews object
rle
Views
10.7 years ago
Sean Davis
21k
2
votes
5
replies
1.9k
views
making a RleViewsList object gets slow with many chromosomes
views
iranges
rle
10.7 years ago
Janet Young
▴ 740
1
vote
1
reply
2.8k
views
Computing NUSE and RLE scores
affyPLM
RLE
NUSE
updated 10.7 years ago by
Sean Davis
21k • written 10.7 years ago by
beverly893
▴ 10
0
votes
2
replies
1.5k
views
boxplot on an Rle object?
Rle
boxplot
10.8 years ago
Johannes Rainer
★ 2.1k
20 results • Page
1 of 1
Recent ...
Replies
Answer: Important: Bioconductor Release 3.22 Delayed
by
shepherl
4.2k
We will continue with the release on Thursday October 30th. We have shifted one day as originally planned. Thank you
Comment: bake() and cool() resulting in an empty table
by
Francesc
• 0
Hi Catherine, thanks so much for using dar and for reporting this bug! We have identified the issue and pushed a fix to the dar repo (PR #…
Comment: Using DESeq2 for age prediction
by
ATpoint
★ 5.0k
You sure will find online tutorials on regression models / machine learning classifiers. The support site is for help with Bioconductor. Ch…
Comment: Using DESeq2 for age prediction
by
picasa1983
• 0
Thanks ! Do you have any idea how to do that ?
Answer: Using DESeq2 for age prediction
by
ATpoint
★ 5.0k
The package has no such inbuilt function but you are free to use the vst (or any normalized) counts to train a regression model or classifi…
Votes
A: Multi-level experiments in Limma
Answer: Should voomWithQualityWeights still be used when the sample-specific weights var
Answer: DESeq2 for candidate gene analysis
DESeq2 for candidate gene analysis
Answer: DESeq2 for candidate gene analysis
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