Showing : RLE • reset
2
votes
1
reply
1.7k
views
deseq2 RLE normalization
RLE normalization deseq2
updated 24 months ago by ★ 4.7k • written 24 months ago by ▴ 10
0
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1
reply
1.2k
views
Resources to learn about s4 object extension/inheritance, custom print methods, and new operations
S4 Rcpp InteractionSet IRanges Rle
updated 4.7 years ago by ★ 28k • written 4.7 years ago by • 0
0
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1
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2.2k
views
RLE plot of DESeq2 normalisation / extract matrix of normalised counts from DESeqDataSet
deseq2 RLE
updated 5.1 years ago by 43k • written 5.1 years ago by • 0
0
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2
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1.4k
views
Error: invalid class "VRanges" object
variantannotation VRanges R Rle
updated 6.7 years ago by ★ 6.8k • written 6.7 years ago by • 0
0
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0
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1.2k
views
Avoid rotating vector when doing arithmetic on different length IRanges RleList entries
iranges s4vectors rle rlelist
6.7 years ago endrebak85 ▴ 40
1
vote
1
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3.6k
views
What does the relative-log expression normalization mean in the deseq2 wrapper function ?
rle deseq2 normalization
updated 6.8 years ago by 43k • written 6.8 years ago by ▴ 20
1
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1
reply
1.4k
views
Subsetting Rle with ORF-sequence-positions by the 3 frames
Rle Big data coverageByTranscript
6.9 years ago hauken_heyken ▴ 80
7
votes
4
replies
1.9k
views
From RleList to RleArray
delayedarray rlelist rle
updated 7.4 years ago by ▴ 750 • written 7.4 years ago by ▴ 980
2
votes
4
replies
1.8k
views
Generic functions for DataFrames of Rle objects ?
DataFrame Rle generic expression table
updated 20 months ago by 16k • written 7.8 years ago by ▴ 180
0
votes
3
replies
2.0k
views
Efficiently construct GRanges/IRanges from Rle vector
Rle granges iranges
8.4 years ago my4 ▴ 10
0
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1
reply
1.9k
views
Efficient coverage calculation with RleList and GRanges
granges Rle coverage View mean
updated 8.7 years ago by ★ 11k • written 8.7 years ago by ▴ 170
6
votes
3
replies
3.1k
views
how does coverage() works
biostrings coverage rle iranges
8.8 years ago likeeatingpizza ▴ 10
0
votes
1
reply
1.6k
views
extract RLE normalized table
rle normalization table
updated 9.4 years ago by ★ 13k • written 9.4 years ago by • 0
3
votes
7
replies
2.3k
views
Add up RLEs that are in lists?
RLE GenomicFeatures rnaseq
updated 9.9 years ago by 16k • written 9.9 years ago by ▴ 30
2
votes
6
replies
3.1k
views
Shrink or Expand RLE
RLE iranges granges coverage
updated 9.9 years ago by 25k • written 9.9 years ago by ▴ 30
2
votes
4
replies
2.2k
views
summing integer RLE
rle list irange grangeslist
updated 9.9 years ago by ▴ 80 • written 9.9 years ago by ▴ 30
1
vote
2
replies
1.3k
views
Summary statistics of RleListViews object
rle Views
10.1 years ago Sean Davis 21k
2
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5
replies
1.7k
views
making a RleViewsList object gets slow with many chromosomes
views iranges rle
10.1 years ago Janet Young ▴ 740
1
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1
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2.6k
views
Computing NUSE and RLE scores
affyPLM RLE NUSE
updated 10.1 years ago by 21k • written 10.1 years ago by ▴ 10
0
votes
2
replies
1.3k
views
boxplot on an Rle object?
Rle boxplot
10.1 years ago Johannes Rainer ★ 2.1k
20 results • Page 1 of 1
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Answer: Using tximport for kallisto aligned TOIL data by James W. MacDonald 68k
If you just have the transcript data, you probably don't need (and maybe cannot use) `tximport`. Instead you could just do the naive thing …
Answer: Reading gene expression data in GPR format and converting it to xlsx format by James W. MacDonald 68k
Setting aside the inadvisability of putting these data into Excel (and I should point out that these data are not single-cell, but instead …
Comment: concentration tables suitable as input for new packages? by wilkinson • 0
I am grateful for your response. Software such as "Spectra" may parse MS-data to generate tables of concentrations, for instance. But inste…
Comment: Removing UTR from GTF for gene quantification by ATpoint ★ 4.7k
Consider asking at biostars or bioinformatics reddit, since this is not directly related to a Bioconductor problem. Anyway, a couple of th…
Comment: Combining RNAseq and microarray data using edgeR/limma-voom by Hoover • 0
I got it! ([Drift Boss][1]) [1]: https://driftbossgame.co
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Answer: Differential expression of proteins using somascan data
Answer: Surprising behavior for DEXseq dispersion estimate plot?
Answer: Handle zero effective gene length when tximport RSEM results
Handle zero effective gene length when tximport RSEM results
How to remove genes with 0 counts in tximport?
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