Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
RLE
•
reset
2
votes
1
reply
2.0k
views
deseq2 RLE normalization
RLE
normalization
deseq2
updated 2.8 years ago by
ATpoint
★ 5.0k • written 2.8 years ago by
SH
▴ 10
0
votes
1
reply
1.6k
views
Resources to learn about s4 object extension/inheritance, custom print methods, and new operations
S4
Rcpp
InteractionSet
IRanges
Rle
updated 5.6 years ago by
Aaron Lun
★ 29k • written 5.6 years ago by
lklei001
• 0
0
votes
1
reply
2.6k
views
RLE plot of DESeq2 normalisation / extract matrix of normalised counts from DESeqDataSet
deseq2
RLE
updated 5.9 years ago by
Michael Love
43k • written 5.9 years ago by
f_pardow
• 0
0
votes
2
replies
1.7k
views
Error: invalid class "VRanges" object
variantannotation
VRanges
R
Rle
updated 7.6 years ago by
Valerie Obenchain
★ 6.8k • written 7.6 years ago by
Jayendra Shinde
• 0
0
votes
0
replies
1.5k
views
Avoid rotating vector when doing arithmetic on different length IRanges RleList entries
iranges
s4vectors
rle
rlelist
7.6 years ago
endrebak85
▴ 40
1
vote
1
reply
4.1k
views
What does the relative-log expression normalization mean in the deseq2 wrapper function ?
rle
deseq2
normalization
updated 7.6 years ago by
Michael Love
43k • written 7.6 years ago by
Aurora
▴ 20
1
vote
1
reply
1.6k
views
Subsetting Rle with ORF-sequence-positions by the 3 frames
Rle
Big data
coverageByTranscript
7.7 years ago
hauken_heyken
▴ 80
7
votes
4
replies
2.2k
views
From RleList to RleArray
delayedarray
rlelist
rle
updated 8.2 years ago by
Peter Hickey
▴ 760 • written 8.2 years ago by
davide risso
▴ 980
2
votes
4
replies
2.2k
views
Generic functions for DataFrames of Rle objects ?
DataFrame
Rle
generic
expression table
updated 2.5 years ago by
Hervé Pagès
16k • written 8.6 years ago by
Charles Plessy
▴ 180
0
votes
3
replies
2.3k
views
Efficiently construct GRanges/IRanges from Rle vector
Rle
granges
iranges
9.3 years ago
my4
▴ 10
0
votes
1
reply
2.1k
views
Efficient coverage calculation with RleList and GRanges
granges
Rle
coverage
View
mean
updated 9.5 years ago by
Michael Lawrence
★ 11k • written 9.5 years ago by
Christian Ruckert
▴ 170
6
votes
3
replies
3.5k
views
how does coverage() works
biostrings
coverage
rle
iranges
9.6 years ago
likeeatingpizza
▴ 10
0
votes
1
reply
1.8k
views
extract RLE normalized table
rle
normalization
table
updated 10.2 years ago by
Steve Lianoglou
★ 13k • written 10.2 years ago by
aiko
• 0
3
votes
7
replies
2.7k
views
Add up RLEs that are in lists?
RLE
GenomicFeatures
rnaseq
updated 10.8 years ago by
Hervé Pagès
16k • written 10.8 years ago by
gen
▴ 30
2
votes
6
replies
3.5k
views
Shrink or Expand RLE
RLE
iranges
granges
coverage
updated 10.8 years ago by
Martin Morgan
25k • written 10.8 years ago by
gen
▴ 30
2
votes
4
replies
2.6k
views
summing integer RLE
rle
list
irange
grangeslist
updated 10.8 years ago by
Chris Seidel
▴ 80 • written 10.8 years ago by
gen
▴ 30
1
vote
2
replies
1.5k
views
Summary statistics of RleListViews object
rle
Views
10.9 years ago
Sean Davis
21k
2
votes
5
replies
2.0k
views
making a RleViewsList object gets slow with many chromosomes
views
iranges
rle
10.9 years ago
Janet Young
▴ 740
1
vote
1
reply
2.9k
views
Computing NUSE and RLE scores
affyPLM
RLE
NUSE
updated 10.9 years ago by
Sean Davis
21k • written 10.9 years ago by
beverly893
▴ 10
0
votes
2
replies
1.5k
views
boxplot on an Rle object?
Rle
boxplot
11.0 years ago
Johannes Rainer
★ 2.1k
20 results • Page
1 of 1
Recent ...
Replies
Comment: Development of MSstat workflow to analyze DIA time series data
by
Gordon Smyth
53k
Are there any other explanatory factors or covariates in your experiment other than time point? Do you have biological replicates at each t…
Answer: Question about the filterByExpr function inputs in edgeR
by
Gordon Smyth
53k
Either of these choices is perfectly acceptable from an edgeR analysis point of view, it is more to do with which is more relevant for your…
Comment: Clarification on counting in Rsubread (featureCounts)
by
Gordon Smyth
53k
Your follow-up question is very much wider than the first, and is essentially a research question rather a software question. As one of the…
Comment: Error in creating BSGenome package
by
Nguyen
• 0
I keep running into this error, please help: ``` Writing all sequences to './BSgenome.Panubis.NCBI.Panubis1.0/inst/extdata/single_sequenc…
Comment: Joining different datasets and analyzing using the group-specific condition effe
by
James W. MacDonald
68k
There is an example of how you can do this in the [DESeq vignette][1]. An alternative would be to fit a linear mixed model using the `vari…
Votes
A: DESeq2: What is the unit of DESeq2 normalized read count (VST)? Is it tag per mi
Answer: Clarification on counting in Rsubread (featureCounts)
Comment: Clarification on counting in Rsubread (featureCounts)
C: ControlGenes/ housekeeping genes Deseq2
Answer: Clarification on counting in Rsubread (featureCounts)
Awards
• All
Popular Question
to
mohammedtoufiq91
▴ 10
Popular Question
to
Lluís Revilla Sancho
▴ 760
Commentator
to
James W. MacDonald
68k
Great Question
to
fl
▴ 20
Popular Question
to
Gordon Smyth
53k
Locations
• All
WEHI, Melbourne, Australia,
1 hour ago
The city by the bay,
2 hours ago
Denmark,
3 hours ago
United States,
4 hours ago
Japan,
4 hours ago
Traffic: 1283 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6