Bioconductor S4

Showing : S4 • reset

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1.3k

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DBI S4 Biobase

updated 2.2 years ago by Hervé Pagès 16k • written 2.2 years ago by sandmann.t ▴ 70

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1.1k

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S4 Rcpp InteractionSet IRanges Rle

updated 4.4 years ago by Aaron Lun ★ 28k • written 4.4 years ago by lklei001 • 0

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970

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calcium imaging imaging s4

updated 4.6 years ago by shepherl 4.1k • written 4.6 years ago by muad.abdelhay ▴ 10

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798

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class S4

updated 4.7 years ago by Hervé Pagès 16k • written 4.7 years ago by Teun van den Brand • 0

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1.2k

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s4 dataframe left_join merge

updated 5.5 years ago by Hervé Pagès 16k • written 5.5 years ago by Michael Steinbaugh ▴ 90

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1.2k

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s4 generic

updated 5.7 years ago by Marcel Ramos 700 • written 5.7 years ago by Michael Steinbaugh ▴ 90

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840

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S4 deseq2

updated 5.8 years ago by swbarnes2 ★ 1.4k • written 5.8 years ago by shintzen • 0

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1.3k

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s4 methods SummarizedExperiment

updated 5.8 years ago by Aaron Lun ★ 28k • written 5.8 years ago by brendan.innes ▴ 20

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1.3k

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devtools S4 methods cache

5.9 years ago Michael Steinbaugh ▴ 90

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1.2k

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S4 packages

updated 6.2 years ago by Michael Lawrence ★ 11k • written 6.2 years ago by lukaszbednarz ▴ 10

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1.3k

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iranges integerlist s4

8.2 years ago Jurat Shahidin ▴ 80

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1.3k

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s4 coercion iranges integerlist

8.2 years ago jian_liangli • 0

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1.5k

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mclust s4vectors S4 as.matrix .FCS

8.4 years ago anara92 • 0

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12k

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genomicranges grangeslist granges s4

updated 2.6 years ago by Hervé Pagès 16k • written 8.4 years ago by richierocks ▴ 40

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1.9k

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rnbeads error as.vector(data) s4vectors s4

9.2 years ago schasse • 0

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5.6k

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updated 9.6 years ago by Michael Lawrence ★ 11k • written 9.6 years ago by Koen Van den Berge ▴ 180

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2.9k

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lumi S4

9.7 years ago Chi Hong • 0

17 results • Page 1 of 1

Recent ...

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Comment: DESeq Input from Salmon + tximport/tximeta by LuciaNhu • 0

Thank you both. Special thanks from Prof. Michael Love. It's rare to find tool authors who respond to users so quickly and supportively. Ma…

Comment: Question about using LRT test for time course experiments with DESeq2 by Denise • 0

Hi James, Yes, I understand that the p-values are with respect to the full versus reduced model comparison. However, the "genes that cha…

Comment: DESeq Input from Salmon + tximport/tximeta by Michael Love 42k

Agree. > for library size and the average transcript length, what additional components will dds <- DESeq(dds) continue to normalize? Will…

Comment: DESeq Input from Salmon + tximport/tximeta by ATpoint ★ 4.5k

> If I use gene_counts_length_scaled.tsv as a metric that has already normalized for library size and the average transcript length No, o…

Answer: Consistent Decimals In Data After Antibody Array Background Correction Using Lim by Gordon Smyth 51k

`nec` computes one set of negative control parameters (mu, sigma, alpha) for each sample. For values much larger than the background, the e…

Votes

Comment: DESeq Input from Salmon + tximport/tximeta

Answer: DESeq Input from Salmon + tximport/tximeta

Answer: featureCounts segmentation fault with large chromosomes

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Popular Question to Assa Yeroslaviz ★ 1.5k