Showing : SC3 • reset
0
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3
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3.6k
views
Installing SC3: gfortran error on Mac M1
SC3
4.2 years ago krp • 0
1
vote
4
replies
2.3k
views
number of cell clusters in scRNA-seq
scran scater sc3
updated 6.5 years ago by ★ 29k • written 6.5 years ago by ▴ 670
0
votes
7
replies
3.2k
views
differential expression between clusters (in distinct "treatments") in scRNAseq
scater limma scde scran sc3
6.5 years ago Bogdan ▴ 670
4
votes
5
replies
2.6k
views
Using SC3 with batch corrected MNN values
SC3 Scater Scran scRNA-Seq Batch Correction
updated 6.7 years ago by ▴ 150 • written 6.7 years ago by ▴ 60
0
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2
replies
1.4k
views
error running sc3_plot_de_genes in SC3 R package
SC3
updated 6.8 years ago by ▴ 150 • written 6.8 years ago by • 0
0
votes
1
reply
1.8k
views
SC3 how to customize plots ?
SC3 plot consensus marker heatmap
updated 7.0 years ago by ▴ 150 • written 7.0 years ago by • 0
0
votes
2
replies
1.3k
views
Failure to cluster SC3
SC3
updated 7.2 years ago by ▴ 150 • written 7.2 years ago by • 0
1
vote
1
reply
1.9k
views
A question about log_transformed
SC3
updated 7.4 years ago by 68k • written 7.4 years ago by • 0
0
votes
2
replies
1.4k
views
How can I show certain gene's expression in clusters by sc3
sc3
updated 7.5 years ago by ▴ 150 • written 7.5 years ago by • 0
1
vote
1
reply
1.2k
views
Is there a way to pull out the stability index matrix from the SC3 object?
sc3
updated 7.8 years ago by ▴ 150 • written 7.9 years ago by ▴ 10
0
votes
1
reply
1.6k
views
SC3 Package: marker genes and normal genes obtained from featureData
SC3
updated 7.9 years ago by ▴ 150 • written 8.0 years ago by • 0
1
vote
1
reply
2.1k
views
Batch effect removal before SC3?
SC3 batch effect removebatcheffect
updated 8.0 years ago by ▴ 150 • written 8.0 years ago by ▴ 10
1
vote
8
replies
3.1k
views
SC3_estimate_k formatting error?
sc3 scater
updated 8.0 years ago by ▴ 150 • written 8.1 years ago by ▴ 10
5
votes
2
replies
7.6k
views
Raw count data for SC3 and SingleCellExperiment set problem
singlecellexperiment sc3 scater
updated 8.1 years ago by ▴ 150 • written 8.1 years ago by ▴ 10
4
votes
5
replies
2.6k
views
SC3 gene clusters
SC3 single cell single-cell Tutorial
updated 8.1 years ago by 25k • written 8.1 years ago by ▴ 20
1
vote
1
reply
1.9k
views
Does SC3 correct counts for gene length?
sc3 scater single-cell rna-seq biclustering
updated 8.3 years ago by ▴ 150 • written 8.3 years ago by ▴ 20
0
votes
1
reply
4.1k
views
Import .mtx file in R
sc3
updated 8.5 years ago by ▴ 150 • written 8.5 years ago by • 0
4
votes
2
replies
1.9k
views
sc3_plot_expression, colour labels
sc3 single-cell
updated 8.5 years ago by ▴ 150 • written 8.5 years ago by ▴ 20
3
votes
3
replies
1.8k
views
Sharing SC3_interactive results
SC3 single-cell shiny
updated 8.6 years ago by ▴ 150 • written 8.6 years ago by ▴ 20
4
votes
3
replies
2.4k
views
using SC3 and scater for bulk-RNAseq
sc3 scater scRNAseq
updated 8.8 years ago by ▴ 150 • written 8.8 years ago by ★ 1.5k
2
votes
5
replies
2.5k
views
sc3_prepare function error
sc3 scater single-cell single cell
updated 8.8 years ago by ▴ 150 • written 8.8 years ago by ★ 1.5k
3
votes
2
replies
1.7k
views
SC3 tutorial error
SC3
updated 9.1 years ago by ▴ 150 • written 9.1 years ago by ▴ 30
3
votes
1
reply
1.7k
views
SC3 with latent variable corrected counts
SC3 single cell
updated 9.1 years ago by ▴ 150 • written 9.1 years ago by ▴ 10
23 results • Page 1 of 1
Recent ...
Replies
Comment: DECIPHER DesignProbes unable to design FISH-probes by Erik Wright ▴ 150
Are the sequences aligned (i.e., the same width) before running `TileSeqs()`?
Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment by Michael Love 43k
BTW, I tested with no issue on MacOS ARM on our previous github issue.
Answer: DESeq(dds, parallel=TRUE) wrong args for environment subassignment by Michael Love 43k
The DESeq2 error makes sense, as we've talked about, given that the simple `bplapply` isn't working in your setup. Maybe give the traceb…
Answer: PTM analysis in LIMPA by Gordon Smyth 53k
For PTM analysis, the usual quantification command dpcQuant() is replaced by dpcImpute(). Otherwise the limpa pipeline is the same as for a…
Answer: problem reading bam files into nucleR by James W. MacDonald 68k
The first step is to update to the current versions of R/Bioconductor and try again. It's possible that you have run into a bug that's alre…
Votes
C: DESeq2 Following RSEM
Upcoming Ensembl API and data access changes - new blog post available
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Large logFC but somewhat high FDR
Comment: upstream git branches of bioc-release
Awards • All
Popular Question to James W. MacDonald 68k
Popular Question to Gordon Smyth 53k
Commentator to sina.nassiri ▴ 130
Popular Question to Hervé Pagès 16k
Popular Question to jared.andrews07 ▴ 30
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