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Shiny
•
reset
0
votes
0
replies
982
views
Displaying large image stacks (e.g. from multiplexed immunohistochemistry) using shiny and EBImage
shiny
EBImage
3.5 years ago
Wolfgang Huber
★ 13k
0
votes
1
reply
1.4k
views
Error in ChAMP GUI
ChAMP
shiny
ChAMPdata
updated 3.8 years ago by
anna.stanislawska
• 0 • written 3.8 years ago by
Mari
• 0
0
votes
0
replies
1.2k
views
Export Results from BatchQC Shiny App
BatchQC
RNA-seq
R
Shiny
batch-effect
5.7 years ago
manninm
• 0
0
votes
1
reply
1.4k
views
AnnotationHub display() gives JavaScript Alert and DataTables warning
AnnotationHub
Shiny
Rstudio
updated 5.9 years ago by
shepherl
4.3k • written 5.9 years ago by
bwiley4
• 0
6
votes
0
replies
1.7k
views
News:
Winners of the 1st Shiny Contest: iSEE
iSEE
shiny
summarizedExperiment
News
6.8 years ago
Aaron Lun
★ 29k
0
votes
7
replies
2.2k
views
Problems with DESeq2 'design' parameter using Shiny/rhandsontable
deseq2
shiny
design
rhandsontable
hot_to_r()
updated 6.9 years ago by
Michael Love
43k • written 6.9 years ago by
hinkel2
• 0
0
votes
1
reply
2.6k
views
DEBrowser shiny - Maximum upload size exceeded - error
DEBrowser
shiny
7.0 years ago
tomasfly
• 0
0
votes
3
replies
2.1k
views
browseGenome with Shiny
rtracklayer
browsegenome
shiny
updated 7.2 years ago by
Michael Lawrence
★ 11k • written 7.3 years ago by
vivek82
• 0
12
votes
3
replies
7.0k
views
Error while uploading Bioconductor packages - R Shiny
shiny
package
deploy
7.8 years ago
lloyd.izard
▴ 80
3
votes
3
replies
1.9k
views
Sharing SC3_interactive results
SC3
single-cell
shiny
updated 8.7 years ago by
Vladimir Kiselev
▴ 150 • written 8.7 years ago by
cfustero
▴ 20
0
votes
1
reply
2.1k
views
News:
Plotly uprading issue in ChAMP package
ChAMP
Epigenetics
plotly
Shiny
GUI
News
9.2 years ago • updated 9.0 years ago
Yuan Tian
▴ 90
0
votes
1
reply
1.6k
views
R packages developed using shiny
shiny
updated 9.2 years ago by
Martin Morgan
25k • written 9.2 years ago by
bhakti.dwivedi
• 0
1
vote
1
reply
1.8k
views
reactive CellCODE heatmap
cellcode
shiny
heatmap
updated 9.7 years ago by
Andrzej Oleś
▴ 750 • written 9.7 years ago by
christopher.clarskon15
▴ 20
0
votes
1
reply
2.1k
views
shiny account on mac not deploying server
limmagui
shiny
9.8 years ago
christopher.clarskon15
▴ 20
7
votes
0
replies
4.6k
views
Tutorial:
New edX "Data analysis for Life Sciences" module: High performance computing for reproducible genomics
annotation
genomicranges
visualization
docker
shiny
Tutorial
9.9 years ago
Vincent J. Carey, Jr.
6.7k
0
votes
0
replies
2.1k
views
Shiny - error messages with validate
R
validate
shiny
10.3 years ago
alptaciroglu
▴ 50
1
vote
7
replies
3.5k
views
Shiny app for RefNet, PSICQUIC: annotated protein/protein interactions
shiny
network
interactions
11.2 years ago
pshannon
▴ 100
17 results • Page
1 of 1
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Comment: Question about the filterByExpr function inputs in edgeR
by
Gordon Smyth
53k
Regarding edgeR v4 filtering, I didn't mention anything about a minimum count of 10 but rather said "a positive count". So a minimalistic f…
Comment: limpa-blank normalization and Spectronaut's PTM stoichiometry
by
JKim
• 0
Hi Emily, He left some comments regarding normalization. Here is the relevant quote: > The EList object produced by dpcQuant(), containi…
Comment: Joining different datasets and analyzing using the group-specific condition effe
by
James W. MacDonald
68k
Yes, making a group factor simplifies things, and you will need a new column for disease subject to avoid having a design that is not full …
Comment: Question about the filterByExpr function inputs in edgeR
by
mohammedtoufiq91
▴ 10
@gordonsmyth Yes, Gender is more a nuisance factor in our experiment, and our primary interest is to compare groups. I will just use filter…
Comment: Joining different datasets and analyzing using the group-specific condition effe
by
jason.chai
• 0
Thank you very much. I had read that and wondered if I used the recommendation in DESeq vignette, I would lose the pairing between groups? …
Votes
Answer: Question about the filterByExpr function inputs in edgeR
A: DESeq2: What is the unit of DESeq2 normalized read count (VST)? Is it tag per mi
Answer: Clarification on counting in Rsubread (featureCounts)
Comment: Clarification on counting in Rsubread (featureCounts)
C: ControlGenes/ housekeeping genes Deseq2
Awards
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Autobiographer
to
Frances Turner
▴ 20
Popular Question
to
maltethodberg
▴ 180
Popular Question
to
mohammedtoufiq91
▴ 10
Popular Question
to
Lluís Revilla Sancho
▴ 760
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to
James W. MacDonald
68k
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