Bioconductor Shiny

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shiny EBImage

21 months ago Wolfgang Huber ★ 13k

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ChAMP shiny ChAMPdata

updated 2.1 years ago by anna.stanislawska • 0 • written 2.1 years ago by Mari • 0

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4.0 years ago manninm • 0

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updated 4.2 years ago by shepherl 3.8k • written 4.2 years ago by bwiley4 • 0

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5.1 years ago Aaron Lun ★ 28k

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updated 5.2 years ago by Michael Love 41k • written 5.2 years ago by hinkel2 • 0

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5.3 years ago tomasfly • 0

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rtracklayer browsegenome shiny

updated 5.5 years ago by Michael Lawrence ★ 11k • written 5.6 years ago by vivek82 • 0

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shiny package deploy

6.1 years ago lloyd.izard ▴ 80

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SC3 single-cell shiny

updated 7.0 years ago by Vladimir Kiselev ▴ 150 • written 7.0 years ago by cfustero ▴ 20

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7.5 years ago • updated 7.3 years ago Yuan Tian ▴ 90

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updated 7.5 years ago by Martin Morgan 25k • written 7.5 years ago by bhakti.dwivedi • 0

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updated 8.0 years ago by Andrzej Oleś ▴ 750 • written 8.0 years ago by christopher.clarskon15 ▴ 20

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limmagui shiny

8.1 years ago christopher.clarskon15 ▴ 20

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8.1 years ago Vincent J. Carey, Jr. 6.7k

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8.6 years ago alptaciroglu ▴ 50

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shiny network interactions

9.5 years ago pshannon ▴ 100

17 results • Page 1 of 1

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Answer: SGSeq: moving toward diffex from SGSeq analysis by Leonard Goldstein ▴ 200

`vid` and `eid` are unique identifiers for splice variants and splicing events respectively. They are analogous to exon bin and gene identi…

Comment: Help with error using camera() in limma by Chris • 0

Thanks James! I fixed the error. I try gene symbol instead of entrez and it worked.

Comment: limma for gene expression analysis with big and unbalanced sample size by XW • 0

Could you explain more about the comment "there are no problems with using limma for unbalanced data sets" ? thanks.

Comment: Limma, eBayes different sample size of groups and adjustment by XW • 0

Could you explain more about how the analysis self-correct the different sample sizes when calling DEGs in limma? Thanks

Answer: How do I select a GC file (gc.wig)? (How to determine the inputdata of HMMcopy) by James W. MacDonald 65k

The section of the vignette that is *directly above the one you quote* says that you can use the HMMcopy utils to do all three things. And …

Votes

C: How to establish a subset from TxDb.Hsapiens.UCSC.hg38.knownGene DB

C: Extremely big genes in annotation TxDb packages

Make custom Txdb class objects from Txdb

Comment: Help with error using camera() in limma

Answer: Help with error using camera() in limma

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