Showing : affylmGUI • reset
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Cutoff to use for IQR filtering in genefilter
affylmGUI affylmGUI
updated 15.9 years ago by ▴ 400 • written 15.9 years ago by ▴ 80
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2.7k
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[Bioc-devel] Tcl/TK pckage "Bwidget"
affylmGUI limmaGUI affylmGUI limmaGUI
17.0 years ago Keith Satterley ▴ 450
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4
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2.4k
views
tcltk package for R 2.14.1
affylmGUI BiocInstaller affylmGUI BiocInstaller
updated 12.3 years ago by ★ 8.2k • written 12.3 years ago by ▴ 70
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18
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2.3k
views
LPE error caused by gcRMA [Error in var.M.adap[i] <- ifelse(!is.na(var.M.adap[i - 1]), mean(var.M.adap[i + : replacement has length zero]
Cancer gcrma LPE affylmGUI Cancer gcrma LPE affylmGUI
updated 15.5 years ago by ▴ 70 • written 15.5 years ago by ★ 13k
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6
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2.2k
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Is anyone developing an extensible Galaxy-like interface for Bioconductor?
affylmGUI limmaGUI affylmGUI limmaGUI
updated 15.7 years ago by ▴ 10 • written 15.7 years ago by ▴ 50
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2
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2.2k
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How to convert probe sets to Gene symbols ?
affylmgui affymetrix microarrays hgu133plus2
updated 8.4 years ago by ▴ 360 • written 8.4 years ago by • 0
0
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8
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1.9k
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oneChannelGUI
Rgraphviz affylmGUI oneChannelGUI Rgraphviz affylmGUI oneChannelGUI
updated 13.4 years ago by ▴ 500 • written 13.4 years ago by ▴ 200
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2
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1.8k
views
Tktable 2.9 makefile problem
GO affylmGUI GO affylmGUI
updated 12.1 years ago by 25k • written 12.1 years ago by ▴ 10
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7
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1.7k
views
Missing GeneSymbol and Name information in TopTable
Annotation hgu133plus2 annaffy affylmGUI Annotation hgu133plus2 annaffy affylmGUI
updated 14.7 years ago by ★ 7.2k • written 14.7 years ago by ▴ 40
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8
replies
1.7k
views
affylmGUI/biocReposList() Problem
affylmGUI affylmGUI
updated 11.8 years ago by 65k • written 11.8 years ago by ▴ 30
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4
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1.5k
views
tkrplot in R2.0 on Mac OS X
affylmGUI affylmGUI
updated 19.4 years ago by ▴ 1000 • written 19.4 years ago by ▴ 100
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0
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1.5k
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Cutoff to use for IQR filtering in genefilter
genefilter affy limma GeneSpring affylmGUI GLAD SIM genefilter affy limma GeneSpring
15.8 years ago Mark Cowley ▴ 400
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8
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1.5k
views
affylmGUI segfault on "pd.ragene.1.0.st.v1"
Normalization GO cdf affy affylmGUI Normalization GO cdf affy affylmGUI
updated 15.3 years ago by ★ 13k • written 15.3 years ago by ▴ 70
0
votes
5
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1.5k
views
Problem with Installing affylmGUI on MAC OS X
Cancer affylmGUI Cancer affylmGUI
18.8 years ago Richard Friedman ★ 2.0k
0
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4
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1.4k
views
Regarding CDF file
cdf affylmGUI cdf affylmGUI
updated 10.9 years ago by 65k • written 10.9 years ago by ▴ 170
0
votes
2
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1.4k
views
Is anyone developing an extensible Galaxy-like interface for Bioconductor?
affylmGUI limmaGUI affylmGUI limmaGUI
updated 15.7 years ago by ▴ 90 • written 15.7 years ago by ▴ 140
0
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3
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1.4k
views
affylmGUI affy affymetrix
affylmgui
updated 8.4 years ago by 50k • written 8.4 years ago by • 0
0
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3
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1.3k
views
limma gene symbol not avialable problem
cdf affy affydata limma affylmGUI affyio cdf affy affydata limma affylmGUI affyio
updated 16.9 years ago by 65k • written 16.9 years ago by ▴ 450
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4
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1.2k
views
Exon Array analysis
cdf affylmGUI cdf affylmGUI
updated 15.1 years ago by ▴ 500 • written 15.1 years ago by ▴ 10
0
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2
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1.2k
views
Bioconductor does not provide Humane gene ST annotation "hugene10stv1cdf" to work with affylmGUI?!
Annotation cdf affylmGUI Annotation cdf affylmGUI
updated 14.6 years ago by ★ 7.2k • written 14.6 years ago by ▴ 10
1
vote
6
replies
1.2k
views
Error while running affylmGUI
microarray limma affy affylmGUI
updated 5.2 years ago by 50k • written 5.2 years ago by • 0
0
votes
1
reply
1.2k
views
Regarding CDF & annotation package
Microarray Annotation affylmGUI Microarray Annotation affylmGUI
updated 11.5 years ago by ★ 3.9k • written 11.5 years ago by ▴ 10
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5
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1.2k
views
CDF/Probe/Annotation for GNF1m custom chip
cdf probe affylmGUI cdf probe affylmGUI
updated 17.1 years ago by ★ 6.5k • written 17.1 years ago by ▴ 830
0
votes
1
reply
1.2k
views
(microarray) - affylmGUI error when reading Affymetrix U133A and U133B .CEL file
Microarray PROcess affylmGUI Microarray PROcess affylmGUI
updated 11.6 years ago by 65k • written 11.6 years ago by ▴ 30
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3
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1.2k
views
Defining and handling replicates
GO affy limma affylmGUI GO affy limma affylmGUI
updated 18.9 years ago by 50k • written 18.9 years ago by ▴ 70
0
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3
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1.2k
views
Error in parse() loading affylmGUI
affylmGUI affylmGUI
updated 19.9 years ago by ▴ 1000 • written 19.9 years ago by ▴ 340
0
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1
reply
1.1k
views
An error of affylmGUI
cdf affy affylmGUI affyio cdf affy affylmGUI affyio
updated 16.7 years ago by ▴ 450 • written 16.7 years ago by ▴ 450
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votes
2
replies
1.1k
views
affylmGUI annotations
Annotation annotate affylmGUI Annotation annotate affylmGUI
updated 12.7 years ago by ★ 2.0k • written 12.7 years ago by ▴ 30
0
votes
3
replies
1.1k
views
R crashes after image array plots hgu133plus2 in R2.6.0
GUI hgu133plus2 affy limma affylmGUI GUI hgu133plus2 affy limma affylmGUI
updated 16.5 years ago by 25k • written 16.5 years ago by ★ 2.0k
0
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0
replies
1.1k
views
BioC GUI development
Microarray Genetics GUI affy limma affylmGUI limmaGUI Microarray Genetics GUI affy
20.4 years ago James Wettenhall ▴ 1000
0
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0
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1.1k
views
Bioconductor does not provide Humane gene ST, annotation "hugene10stv1cdf" to work with affylmGUI?!
Annotation cdf affylmGUI Annotation cdf affylmGUI
14.6 years ago rcaloger ▴ 500
0
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0
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1.1k
views
TopTable function in affylmGUI does not have Gene names
affylmGUI affylmGUI
12.4 years ago Guest User ★ 13k
0
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1
reply
1.1k
views
Re: Limma GUI exporting
Microarray limma affylmGUI limmaGUI Microarray limma affylmGUI limmaGUI
19.9 years ago James Wettenhall ▴ 1000
0
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0
replies
1.0k
views
Re: affylmGUI
Genetics affylmGUI limmaGUI convert Genetics affylmGUI limmaGUI convert
19.9 years ago James Wettenhall ▴ 1000
0
votes
1
reply
1.0k
views
loading CEL files in affylmGUI
Annotation affylmGUI Annotation affylmGUI
updated 19.9 years ago by ▴ 1000 • written 19.9 years ago by ▴ 60
0
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3
replies
1.0k
views
Using CDF file on affylmGUI
Proteomics GO affylmGUI Proteomics GO affylmGUI
updated 17.5 years ago by ▴ 450 • written 17.5 years ago by ▴ 70
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0
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1.0k
views
Issues running affylmGUI
Cancer Breast affylmGUI Cancer Breast affylmGUI
13.4 years ago Lorenzo Melchor ▴ 50
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votes
2
replies
1.0k
views
R scripts from AffylmGUI
Microarray affylmGUI Microarray affylmGUI
updated 14.8 years ago by ▴ 450 • written 14.8 years ago by ▴ 200
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0
replies
1.0k
views
problems with oneChannelGUI
affylmGUI oneChannelGUI ASSIGN affylmGUI oneChannelGUI ASSIGN
12.1 years ago Manuela Di Russo ▴ 70
0
votes
0
replies
999
views
Question (vennDiagram vs. topTable) + Patch (plotTitle for vennDiagram) for AffylmGUI 1.3.0
affylmGUI affylmGUI
18.9 years ago Steffen Moeller ▴ 40
0
votes
0
replies
996
views
limma citations [was LimmaGUI for illumina data]
Annotation GUI Kidney limma affylmGUI limmaGUI Annotation GUI Kidney limma affylmGUI
17.9 years ago Gordon Smyth 50k
0
votes
1
reply
996
views
Difficulty installing oneChannelGUI in Vista
Cancer affylmGUI oneChannelGUI Cancer affylmGUI oneChannelGUI
updated 13.9 years ago by 65k • written 13.9 years ago by ★ 2.0k
0
votes
0
replies
980
views
LimmaGUI for illumina data
GUI affy limma affylmGUI limmaGUI beadarray GUI affy limma affylmGUI limmaGUI beadarray
17.9 years ago Mark Dunning ▴ 320
0
votes
1
reply
972
views
AffylmGUI freezes with recent updates of Windows 7 Enterprise Service Pack 1
Cancer affylmGUI Cancer affylmGUI
updated 11.3 years ago by ▴ 450 • written 11.3 years ago by ★ 2.0k
0
votes
1
reply
951
views
how to import mas5 data into expresso (affy package)
Microarray limma PROcess affylmGUI Microarray limma PROcess affylmGUI
updated 15.9 years ago by 65k • written 15.9 years ago by ▴ 80
0
votes
0
replies
944
views
Different result from gcrma function by using command line gcrma, affylmGUI and oneChannelGUI.
gcrma affylmGUI oneChannelGUI gcrma affylmGUI oneChannelGUI
13.7 years ago Lin Ying ▴ 10
0
votes
0
replies
930
views
Request for users of limmaGUI, affylmGUI, JSM2005 or IBC2004 microarray course websites or my R-Tcl/Tk examples
affylmGUI limmaGUI affylmGUI limmaGUI
18.2 years ago James Wettenhall ▴ 1000
0
votes
0
replies
927
views
Is anyone developing an extensible Galaxy-like interface for Bioconductor?
Cancer affylmGUI limmaGUI Cancer affylmGUI limmaGUI
15.7 years ago Martin Morgan 25k
0
votes
1
reply
923
views
Affy huGENE ST arrays
cdf affy affylmGUI cdf affy affylmGUI
updated 14.7 years ago by ★ 7.2k • written 14.7 years ago by ▴ 10
0
votes
1
reply
912
views
Anopheles/malaria Affy chips
affy simpleaffy affylmGUI affy simpleaffy affylmGUI
updated 19.9 years ago by ▴ 950 • written 19.9 years ago by ▴ 510
50 results • Page 1 of 1
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Comment: Why p value inconsistent when using different number of pathway score? by Chris • 0
Hi Robert, if two conditions don't have hundreds of differential express genes ( in some conditions such as peripheral blood Alzheimer vs n…
Answer: Dominance Index for Shotgun Metagenomics Data by Leo Lahti ▴ 40
1. Note that Simpson's dominance index (\lambda) is a different index than inverse Simpson (1/\lambda) or reciprocal Simpson (1-\lambda). T…
Comment: Math expression in shapeCustom legend in EnhancedVolcano by pl23 • 0
Thank you very much - that worked perfectly! Word of warning to those who try this: it screws up the other legends because of the markdown …
Answer: PCA plot suggestions by Michael Love 41k
For help with interpretation and design of analysis, I recommend working with a local statistician. Due to time restrictions, I can only…
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length by ussarizona ▴ 10
Hi Michael, Yes, I could figure it out what does the error mean. In my matrix I had the first colum GeneID while in my condition I only h…
Votes
Answer: Dominance Index for Shotgun Metagenomics Data
Answer: Math expression in shapeCustom legend in EnhancedVolcano
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
Comment: Deseq2. decontXcounts not integers. Useful alternative?
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
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