Bioconductor Analysis

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1.8k

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mta10 affy analysis

7.8 years ago iankoudinova ▴ 10

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1.7k

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cummeRbund Script analysis RNAseq cuffdiff

updated 9.0 years ago by andrew.j.skelton73 ▴ 370 • written 9.0 years ago by mfahim • 0

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1.4k

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edger data analysis

8.9 years ago Pau Marc Muñoz Torres ▴ 20

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819

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ddCt import analysis R qRTPCR

updated 4.7 years ago by Zhang, Jitao David ▴ 120 • written 4.7 years ago by mohammedtoufiq91 ▴ 10

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1.7k

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microarray affymetrix microarrays analysis

updated 8.6 years ago by Guido Hooiveld ★ 3.9k • written 8.6 years ago by Michaela.Fuchs • 0

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1.4k

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agilent microarrays microrna analysis

6.7 years ago arisarkar88 ▴ 40

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1.8k

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minfi 450k EPIC analysis

updated 4.7 years ago by James W. MacDonald 65k • written 4.7 years ago by maduran • 0

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904

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microarray protein analysis ProteomeProfiler

updated 4.2 years ago by Gordon Smyth 50k • written 4.2 years ago by hcnbox • 0

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1.2k

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non-model enrichment organisms analysis

updated 17 months ago by Guido Hooiveld ★ 3.9k • written 19 months ago by yuhang • 0

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521

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analysis R GOfuncR

updated 10 months ago by Lluís Revilla Sancho ▴ 730 • written 10 months ago by Eliza • 0

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1.8k

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Proteomics analysis

updated 22 months ago by jeroen.gilis ▴ 90 • written 22 months ago by Shakiba • 0

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893

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genomics analysis bioinformatics Job

4.9 years ago jmaanaki • 0

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915

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microarray analysis

6.9 years ago arisarkar88 ▴ 40

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546

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R analysis p_values RNASeq

updated 2.3 years ago by Sean Davis 21k • written 2.3 years ago by johndavidgriner74 • 0

14 results • Page 1 of 1

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Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Michael Love 41k

The segmentation and block length are key parameters. We recommend for example blocks of length ~500kb. It would help if you would post yo…

Answer: Handling multiple differential expression comparisons by Michael Love 41k

It's typical that results are presented with each group having its own FDR control. So presenting each comparison with the adjusted p-va…

Comment: Too many significant genes when integrating gtex and tcga by ATpoint ★ 4.1k

These two datasets are from completely different experiments / batches. It is utterly meaningless to compare them. I would suggest comparat…

Answer: fgsea significant result by ATpoint ★ 4.1k

Set a fixed seed before running this. Note that a FDR of 0.25 in fgsea is wildly and overly lenient. See https://support.bioconductor.o…

Answer: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Poonam • 0

Hi Michael, I think there is something wrong with the generation of nullranges. I was working with small RNA and methylation overlaps. …

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Print Differentially Expressed Exons From Dexseq Results

Answer: Why does GSEA on edgeR results for randomized samples give highly significant p-

Answer: limma Intercept vs No-intercept models completely changing DMR results?

Answer: CombineArrays for EPIC and EPIC V2

Answer: Too many significant genes when integrating gtex and tcga

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