Bioconductor Bed

Showing : bed • reset

votes

replies

1.7k

views

gviz BED Ucsc UcscTrack

8.3 years ago Andy91 ▴ 60

vote

replies

1.4k

views

rtracklayer NA BED getseq

8.5 years ago Dimitris Polychronopoulos ▴ 80

votes

replies

5.4k

views

rtracklayer bed

updated 3.2 years ago by merv ▴ 120 • written 8.1 years ago by Ryan C. Thompson ★ 7.9k

votes

replies

1.2k

views

annotationhub bugs encode bed

7.4 years ago wcstcyx ▴ 30

votes

1.6k

views

coverage bed

updated 6.7 years ago by James W. MacDonald 65k • written 6.7 years ago by sgupt46 • 0

vote

replies

1.2k

views

rtracklayer bed software error

updated 6.6 years ago by Michael Lawrence ★ 11k • written 6.6 years ago by Ryan C. Thompson ★ 7.9k

votes

replies

1.4k

views

granges bed genomicranges genomeintervals deseq2

6.3 years ago rbronste ▴ 60

votes

1.5k

views

bed vcf

updated 5.9 years ago by GENOMIC_region • 0 • written 5.9 years ago by Bogdan ▴ 670

votes

replies

1.2k

views

rtracklayer bed genomicranges

updated 5.5 years ago by Michael Lawrence ★ 11k • written 5.5 years ago by foehn ▴ 100

votes

899

views

mappability bed python

updated 2.3 years ago by James W. MacDonald 65k • written 2.3 years ago by the • 0

votes

replies

1.2k

views

bed bigBed rtracklayer ucsc

18 months ago • updated 17 months ago L ▴ 50

votes

replies

5.5k

views

rtracklayer R bed

updated 16 months ago by Walters • 0 • written 21 months ago by L ▴ 50

vote

replies

2.6k

views

rtracklayer import bed

updated 8.1 years ago by Michael Lawrence ★ 11k • written 8.1 years ago by Peter Hickey ▴ 740

votes

replies

947

views

readTranscriptFeatures R genomation bed

updated 15 months ago by James W. MacDonald 65k • written 16 months ago by sat • 0

votes

replies

790

views

sushi bed

5.6 years ago maltethodberg ▴ 180

votes

replies

2.1k

views

readvcf plink file conversion bed bioc-devel

9.1 years ago mjsduncan • 0

16 results • Page 1 of 1

Recent ...

Replies

Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it by Mike Smith ★ 6.5k

The other answers here are all good and demonstrate the issue with floating point comparisons nicely. I'd like to add that your particular…

Comment: More regions in union when increasing DBA$config$mergeOverlap by Ian D. ▴ 70

Nudging my question. I could do with confirmation before proceeding with my current projects. Thank you.

Comment: Extremely small p-values using Limma for proteomic data by Robert Castelo ★ 3.3k

From the point of view of visualization, I find handy the fact that raw p-values give more resolution than adjusted ones, which allows one …

Comment: deseq2 results by ATpoint ★ 4.1k

> the results are not satisfactory to me Well, what is your question? The DESeq2 vignette covers how to do analysis, and some diagnostics…

Comment: Extremely small p-values using Limma for proteomic data by ATpoint ★ 4.1k

It's not an implementation problem I am discussing (it's trivial obviously) -- more that for most purposes the y-axis metric should be the …

Votes

Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it

Comment: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it

Answer: minfi latest update for EPIC V2 chip

A: Error in DESeqDataSet : some values in assay are not integers

Answer: Cannot connect to ExperimentHub server

Awards • All

Scholar to Robert Castelo ★ 3.3k

Popular Question to Gyan Prakash Mishra ▴ 10