Showing : chippeakanno • reset
22
votes
10
replies
7.5k
views
Error in GRanges: could not find symbol "recursive" in environment of the generic function
granges chippeakanno
updated 7.2 years ago by ▴ 10 • written 7.2 years ago by ▴ 80
9
votes
16
replies
1.7k
views
How to apply ChIPpeakAnno to your Granger object to annotate the peaks?
ChIPpeakAnno
13 months ago Chris ▴ 10
7
votes
9
replies
1.9k
views
counts of overlapping peaks using findOverlapOfPeaks from ChIPpeakAnno
chippeakanno
updated 3.7 years ago by ★ 4.3k • written 3.7 years ago by ▴ 140
5
votes
15
replies
3.4k
views
nearest genes using TxDb.Hsapiens.UCSC.hg19
txdb.hsapiens.ucsc.hg19.knowngene ChIPpeakAnno
updated 7.9 years ago by ★ 4.3k • written 8.0 years ago by ▴ 140
5
votes
4
replies
4.7k
views
What are out-of-bound ranges? Is it necessary to get rid of them?
r ChIPpeakAnno
7.1 years ago • updated 6.8 years ago salamandra ▴ 20
4
votes
12
replies
2.6k
views
Curious behaviour of ChIPpeakAnno
chippeakanno
updated 9.5 years ago by ★ 1.3k • written 9.5 years ago by ▴ 20
4
votes
3
replies
1.3k
views
Annotation Database for ChIPpeakAnno
ChIPpeakAnno
updated 6.9 years ago by ★ 1.3k • written 6.9 years ago by ▴ 110
4
votes
5
replies
1.7k
views
ChIPpeakAnno getAnnotation request fail
chippeakanno biomart ensembl
8.3 years ago igor ▴ 50
3
votes
7
replies
884
views
Genes in open chromatin region
ChIPpeakAnno DiffBind
written 8 months ago by ▴ 10
3
votes
6
replies
1.6k
views
ChIP peak annotation: how to get all genes that overlap each peak?
ChIP-seq chippeakanno chipseeker
5.8 years ago 94133 • 0
3
votes
5
replies
3.6k
views
Error with ChIPpeakAnno Ensembl annotation
ChIPpeakAnno genomicfeatures
updated 7.5 years ago by ★ 4.3k • written 7.5 years ago by ▴ 360
2
votes
2
replies
816
views
how to suppress makeVennDiagram plot
ChIPpeakAnno
3.8 years ago C T ▴ 140
2
votes
2
replies
1.6k
views
Can't install ChIPpeakanno - "libmysqlclient was not found" - do I need to remove latest version of R?
ChIPpeakAnno
updated 6.3 years ago by ★ 6.5k • written 6.3 years ago by ▴ 30
2
votes
6
replies
2.2k
views
Problem converting a bed file to granges using togranges chippeakanno
ChIPpeakAnno
updated 2.3 years ago by ▴ 70 • written 2.3 years ago by • 0
2
votes
2
replies
1.3k
views
Hello how to use ChIPpeakAnno for latest version of ensemble genome aligned data
ChIPpeakAnno
3.2 years ago Lucky • 0
2
votes
3
replies
2.7k
views
org.Mm.eg.db mm9 version for ChIPpeakAnno getEnrichedGO function
chippeakanno annotationdbi
updated 6.6 years ago by • 0 • written 8.6 years ago by • 0
2
votes
7
replies
2.9k
views
ChIPpeakAnno-problem exporting data due to "arguments imply differing number of rows"
chippeakanno
updated 7.5 years ago by ★ 4.3k • written 7.5 years ago by • 0
2
votes
4
replies
1.7k
views
ChIPpeakAnno annotatePeakInBatch output
chippeakanno
8.3 years ago igor ▴ 50
2
votes
10
replies
3.3k
views
ChIPpeakAnno, MACS format annotation
bioconductor ChIPpeakAnno
updated 5.3 years ago by ★ 4.3k • written 7.1 years ago by ▴ 30
2
votes
14
replies
1.2k
views
ChIPpeakAnno: S.lycopersicum annotation missing
ChIPpeakAnno ChIPSeq
updated 8 months ago by 65k • written 9 months ago by ▴ 10
2
votes
1
reply
1.3k
views
ChIPpeakAnno: Non-empty IRange object in case of no overlap
chippeakanno iranges
updated 9.4 years ago by ★ 4.3k • written 9.4 years ago by ▴ 30
2
votes
3
replies
1.6k
views
ChIPpeakAnno-annotation of peaklist with gene names, creating heat maps
chippeakanno overlappingpeaks annotation
updated 7.4 years ago by ★ 1.3k • written 7.4 years ago by • 0
1
vote
6
replies
1.4k
views
how does "maxgap" in ChIPpeakAnno working?
ChIPpeakAnno
5.3 years ago ngs06 ▴ 20
1
vote
1
reply
949
views
Custom regions in assignChromosomeRegion?
chippeakanno
updated 6.3 years ago by ★ 1.3k • written 6.3 years ago by • 0
1
vote
2
replies
1.7k
views
another problem when converting bed to granges using togranges
ChIPpeakAnno
2.3 years ago Bakhtiyar • 0
1
vote
1
reply
644
views
How can I do pathway analysis by ChipPeakAnno package?
ChIPpeakAnno
21 months ago mehdi • 0
1
vote
5
replies
602
views
ChIPpeakAnno annotatePeakInBatch output
ChIPpeakAnno
6 months ago ilaria.maurizio • 0
1
vote
6
replies
1.6k
views
Annotation by CHIPeakAnno tool
ChIPpeakAnno
2.9 years ago Arunima ▴ 10
1
vote
2
replies
2.5k
views
ChIPpeakAnno findOverlapsOfPeaks error: "Error in FUN(X[[i]], ...) : Inputs contains duplicated ranges. please recheck your inputs."
HELP ChIPpeakAnno
2.5 years ago lexi.kellington • 0
1
vote
3
replies
931
views
genomicElementDistribution function not found
ChIPpeakAnno
updated 2.9 years ago by ★ 4.3k • written 2.9 years ago by ▴ 10
1
vote
2
replies
977
views
How to get 'shortest' distance with ChIPpeakAnno::binOverFeature
ChIPpeakAnno
4.8 years ago liruiradiant • 0
1
vote
2
replies
643
views
How to map geneIds to ENTREZIDs
Xenopus_laevis ChIPpeakAnno
15 months ago stacy.genovese • 0
1
vote
2
replies
2.4k
views
Error : object path is not exported by namespace:Rsamtools
packages installation problem rsamtools chippeakanno ensembldb
6.4 years ago inzirio ▴ 10
1
vote
4
replies
1.5k
views
ChIPpeakAnno binOverGene error
chippeakanno binOverGene
updated 6.5 years ago by ★ 1.3k • written 6.5 years ago by • 0
1
vote
1
reply
970
views
Row clustering featureAlignedHeatmap function (ChipPeakAnno package)
heatmap chippeakanno
updated 6.1 years ago by ★ 1.3k • written 6.1 years ago by • 0
1
vote
1
reply
620
views
Interpretation of $vennCounts output "Others"
ChIPpeakAnno
updated 17 months ago by ★ 1.3k • written 17 months ago by ▴ 10
1
vote
9
replies
3.8k
views
ChIPpeakAnno: findOverlapsOfPeaks keep GRanges metadata
chippeakanno findOverlapsOfPeaks
updated 9.0 years ago by ▴ 240 • written 9.0 years ago by ▴ 30
1
vote
1
reply
2.0k
views
ChIP-seq, peak annotation using ChIPpeakAnno
chipseq chippeakanno
updated 8.5 years ago by ★ 1.3k • written 8.5 years ago by • 0
1
vote
1
reply
1.1k
views
Regarding ChIPpeakAnno installation error
chippeakanno
updated 7.0 years ago by 25k • written 7.0 years ago by ▴ 10
1
vote
2
replies
2.0k
views
ChipPeakAnno:getAnnotation using UCSC instead of ensembl
annotation chippeakanno
updated 9.4 years ago by ★ 1.3k • written 9.4 years ago by • 0
0
votes
7
replies
1.9k
views
ChIPpeakAnno::getEnrichedGo crashes but I don't know why
annotate ChIPpeakAnno annotate ChIPpeakAnno
updated 13.4 years ago by ★ 4.3k • written 13.4 years ago by ▴ 40
0
votes
0
replies
849
views
Regarding to ChIPpeakAnno package
ChIPpeakAnno ChIPpeakAnno
13.4 years ago Julie Zhu ★ 4.3k
0
votes
7
replies
1.5k
views
[Bioc-sig-seq] ChIPpeakAnno annotatePeakInBatch function
Annotation GO BSgenome BSgenome ChIPpeakAnno Annotation GO BSgenome BSgenome ChIPpeakAnno
updated 14.2 years ago by ▴ 310 • written 14.2 years ago by ★ 4.3k
0
votes
0
replies
667
views
A question about outputting GO annotation
Annotation GO ChIPpeakAnno Annotation GO ChIPpeakAnno
13.5 years ago Julie Zhu ★ 4.3k
0
votes
2
replies
1.2k
views
totalTest number in ChipPeakAnno
ChIPpeakAnno ChIPpeakAnno
updated 13.5 years ago by ▴ 30 • written 13.5 years ago by ▴ 410
0
votes
3
replies
1.1k
views
ChIPpeakAnno
Transcription ChIPpeakAnno Transcription ChIPpeakAnno
14.3 years ago • updated 14.2 years ago Julie Zhu ★ 4.3k
0
votes
2
replies
1.5k
views
About ChIPpeakAnno
miRNA ChIPpeakAnno miRNA ChIPpeakAnno
updated 10.1 years ago by ★ 4.3k • written 10.1 years ago by ▴ 330
0
votes
0
replies
763
views
ChIPpeakAnno
ChIPpeakAnno ChIPpeakAnno
13.6 years ago Julie Zhu ★ 4.3k
0
votes
3
replies
1.2k
views
strange ChIPpeakAnno and rtracklayer interaction.
GO annotate rtracklayer ChIPpeakAnno GO annotate rtracklayer ChIPpeakAnno
updated 13.6 years ago by ★ 11k • written 13.6 years ago by ▴ 20
0
votes
0
replies
776
views
[Bioc-devel] BSgenome error
GO BSgenome BSgenome IRanges ChIPpeakAnno GO BSgenome BSgenome IRanges ChIPpeakAnno
14.4 years ago Tony Chiang ▴ 570
50 results • Page 1 of 1
Recent ...
Replies
Comment: Numerical differences in DESeq2 output depending on different design matrix cons by Ken C • 0
Hi Michael, thanks a lot for your prompt reply! Not sure if this is appropriate or if you are the right person to ask -- is there anything…
Comment: Numerical differences in DESeq2 output depending on different design matrix cons by Ken C • 0
Well, if I look at genes with baseMean>50, then the relative absolute difference in log2FoldChange (say over the absolute log2FoldChange of…
Comment: all variables in design formula must be columns in colData (Deseq2) error by Galina • 0
Thank you for advice, you mean I need to add: countdata_rat <- data.frame(condition = as.factor(METADATA_RAT$treatment)) and total: dds_…
Answer: all variables in design formula must be columns in colData (Deseq2) error by ATpoint ★ 4.1k
Your code is poorly readable. Suggest you select and then highlight with markdown using the `10101` button. Generally, colData(dds) must…
Answer: Subsetting RNAseq data | voomaByGroup() by Gordon Smyth 50k
Judging from your MDS plot, cell types 1 and 2 look radically different, so it would make perfect sense to analyse them separately. There's…
Votes
Answer: Error while installing BiocManager::install("org.Vdahliae.eg.db")
Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Rsubread counting peaks ATACseq
Awards • All
Popular Question to Dario Strbenac ★ 1.5k
Popular Question to Vincent J. Carey, Jr. 6.7k
Popular Question to Koen Van den Berge ▴ 180
Popular Question to shepherl 3.9k
Popular Question to Ken C • 0
Locations • All
Singapore, 9 minutes ago
Portugal, 20 minutes ago
Slovakia, 22 minutes ago
United States, 30 minutes ago
United States, 1 hour ago
Traffic: 345 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6