Showing : chipqc • reset
5
votes
11
replies
2.1k
views
ChIPQC Error in .Call2 NCList object is too deep
ChIPQC
updated 6.5 years ago by ▴ 420 • written 6.5 years ago by ▴ 10
5
votes
3
replies
2.0k
views
ChIPQC error: "if (nrow(pv$binding) > 0) { : argument is of length zero"
chipqc
7.8 years ago Danielle Denisko ▴ 30
4
votes
2
replies
1.3k
views
ChIPQC : ChIPQCreport(experiment) swap memory overload
ChIPQC ChIPQCreport
updated 7.0 years ago by ▴ 420 • written 7.0 years ago by ▴ 60
4
votes
13
replies
3.8k
views
BiocParallel error with ChIPQC
BiocManager ChIPQC RSamtools BiocParallel
updated 16 months ago by ★ 5.2k • written 23 months ago by • 0
4
votes
8
replies
2.4k
views
ChIPQC v1.4 fails uninformatively where version 1.2 works fine
chipqc
updated 8.9 years ago by ★ 5.2k • written 9.1 years ago by ▴ 140
4
votes
2
replies
1.8k
views
Confusing error when running ChIPQC
chipqc chipseq
updated 8.6 years ago by ▴ 420 • written 8.6 years ago by ★ 7.9k
4
votes
8
replies
2.2k
views
ChIPQC and/or Diffbind - retrieving normalized read counts for peaks from single sample
DiffBind ChIPQC
8.3 years ago JD ▴ 10
4
votes
6
replies
2.0k
views
ChIPQC GRCh38 usage yields "Unsupported annotation:hg38"
chipqc ChIPQC
updated 7.7 years ago by ▴ 420 • written 7.7 years ago by ▴ 50
3
votes
7
replies
2.4k
views
ChIPQC for a single sample (disabling facets)
ChipQc chipqc
7.9 years ago Coby Viner ▴ 50
3
votes
1
reply
3.2k
views
creating custom genome annotation for the ChIPQC package
ChIPSeq QC ChIPQC
updated 8.8 years ago by ▴ 420 • written 8.8 years ago by ▴ 160
3
votes
1
reply
1.1k
views
shiftApply verbosity (in ChIPQC)
ChIPQC s4vectors
updated 8.0 years ago by ▴ 420 • written 8.2 years ago by ▴ 140
3
votes
4
replies
1.4k
views
ChIPQC on samples without peaks and wrong total reads
chipqc
updated 7.6 years ago by ▴ 420 • written 7.7 years ago by ▴ 10
3
votes
6
replies
1.9k
views
Integer overflow issue with ChIPQC
ChIPQC Rstudio
updated 4.9 years ago by 25k • written 4.9 years ago by ▴ 30
3
votes
9
replies
2.9k
views
ChIPQC and broadPeak input
chipseq chipqc chip-seq
8.7 years ago lindahove ▴ 10
3
votes
6
replies
1.4k
views
ChIPQCreport yields a cryptic error if "Replicate" data is not specified
ChIPQC chipqc
updated 7.6 years ago by ★ 5.2k • written 7.6 years ago by ▴ 50
3
votes
1
reply
935
views
ChIPQC 'Contigs of interest are not all in Bam file!!' error
ChIPQC
3.0 years ago Jonah ▴ 20
3
votes
12
replies
3.9k
views
ChIPQC failling when run ChIPQC() over 6 samples
chipqc
updated 6.7 years ago by ▴ 420 • written 9.2 years ago by • 0
3
votes
6
replies
14k
views
Error: Faceting variables must have at least one value when plotting with ChIPQC
ChipQC chipqc
updated 19 months ago by • 0 • written 7.7 years ago by ▴ 10
3
votes
5
replies
2.5k
views
ChIPQC - can't read in bam files
chipqc chipqcreport
5.7 years ago molly_the_minotaur ▴ 30
2
votes
3
replies
1.7k
views
ChipQC 'names' attribute [9] must be the same length as the vector [2]'
chipqc
updated 4 days ago by • 0 • written 3.6 years ago by ▴ 60
2
votes
6
replies
2.2k
views
ChIPQC: error during annotation compilation
ChIPQC
updated 5.7 years ago by ▴ 420 • written 5.7 years ago by ▴ 10
2
votes
7
replies
2.0k
views
How to generate custom annotation for rat genome rn6 in ChIPQC
ChIPQC annotation rn6
updated 4 months ago by • 0 • written 3.7 years ago by • 0
2
votes
5
replies
1.5k
views
Error involving ChIPQCreport
ChIPQC
updated 7.1 years ago by ▴ 420 • written 7.2 years ago by • 0
2
votes
4
replies
3.0k
views
ChIPQC error: "names' attribute [9] must be the same length as the vector [7]"
ChIPQC
updated 2.8 years ago by • 0 • written 4.9 years ago by ▴ 20
2
votes
5
replies
2.0k
views
ChIPQC gives Error subscript contains out-of-bounds ranges with custom transcript database
chipqc
updated 7.0 years ago by ▴ 420 • written 7.0 years ago by • 0
2
votes
1
reply
1.6k
views
ChIPQC with GRCh38/hg38 requires manual loading of hg38 annotation
chipqc
updated 6.9 years ago by ▴ 420 • written 6.9 years ago by ▴ 50
2
votes
2
replies
1.4k
views
ChIPQC gives Bam file has 297 contigs Error: subscript contains out-of-bounds indices
ChIP-seq ChIPQC QC
updated 4.8 years ago by ▴ 20 • written 5.2 years ago by ▴ 10
2
votes
5
replies
1.8k
views
Diffbind: dba.plot retrieve variance explained
diffbind chipqc
updated 6.7 years ago by ★ 5.2k • written 6.7 years ago by ▴ 60
2
votes
1
reply
1.7k
views
DiffBind: Error in if (res$config$bCorPlot) { : the condition has length > 1
DiffBind ChIPQC
updated 20 months ago by ★ 5.2k • written 20 months ago by • 0
1
vote
2
replies
2.8k
views
'reached elapsed time limit' error on ChIPQC
ChIPQC
updated 7.8 years ago by 25k • written 7.8 years ago by • 0
1
vote
4
replies
2.2k
views
ChIPQC: reads counts in bam do not match ones from samtools flagstat
chipqc
updated 9.2 years ago by ▴ 420 • written 9.2 years ago by • 0
1
vote
4
replies
1.6k
views
ChIPQC error: Error in generating sample data
ChIPQC
updated 8.0 years ago by ★ 5.2k • written 8.0 years ago by ▴ 30
1
vote
2
replies
1.1k
views
ChIPQC report missing figures
chipqc software error
updated 6.9 years ago by ▴ 420 • written 6.9 years ago by ▴ 30
1
vote
3
replies
1.1k
views
ChIPQC installation does not force latest DiffBind version
chipqc diffbind chipqcreport
updated 6.9 years ago by ▴ 420 • written 6.9 years ago by ▴ 50
1
vote
3
replies
2.2k
views
ChipQC Error: first error: could not find function "seqlevels<-"
software error chipqc
6.9 years ago • updated 6.8 years ago tirza.doniger ▴ 20
1
vote
3
replies
1.2k
views
ChIPQC : ChIPQCreport(dba_object) getting error when drawing plotFribl
ChIPQC
6.9 years ago ZheFrench ▴ 60
1
vote
1
reply
1.8k
views
ChIPQC bam and bed files question
chipqc
updated 6.9 years ago by ▴ 420 • written 6.9 years ago by • 0
1
vote
3
replies
2.7k
views
Downsampling ChIP-seq BAM files with spike in normalization factor before feeding into Diffbind
diffbind chipseq chipqc
updated 3.5 years ago by ★ 5.2k • written 6.2 years ago by ▴ 10
1
vote
7
replies
2.8k
views
ChipQC not loading files
ChipQC diffbind
updated 5.8 years ago by ▴ 420 • written 5.8 years ago by • 0
1
vote
1
reply
1.2k
views
ChIPQC: issues with report generation and QC metrics
ChIPQC software error
4.7 years ago ryleehackley • 0
1
vote
2
replies
822
views
ChIPQC: log2 or log10?
ChIPQC
2.8 years ago etiennedanis • 0
1
vote
2
replies
969
views
Could it be possible to get an older version of ChIPQC?
ChIPQC ChIP-seq DiffBind Rory_Stark
22 months ago • updated 21 months ago etiennedanis • 0
0
votes
2
replies
1.1k
views
ChIPQC error in previously working code (BAM association error)
chipqc
updated 17 months ago by • 0 • written 3.1 years ago by ▴ 50
0
votes
1
reply
2.0k
views
PCR bottleneck coefficient (PBC)
chipqc
updated 6.9 years ago by ★ 5.2k • written 6.9 years ago by ▴ 140
0
votes
3
replies
1.3k
views
ChiPQC run time error
ChiPQC
updated 6.8 years ago by ▴ 420 • written 6.8 years ago by • 0
0
votes
4
replies
1.6k
views
Unhelpful Errors Running ChIPQC on Computing Cluster
chipqc chipqcreport
6.7 years ago jared.andrews07 ▴ 30
0
votes
0
replies
810
views
ChIPQC comparison of controls - uniqueness error
chipqc
7.0 years ago Coby Viner ▴ 50
0
votes
1
reply
1.5k
views
Can ChIPQC analyze mandarin duck ChIP-Seq data?
ChIPQC
updated 6.6 years ago by ▴ 420 • written 6.7 years ago by ▴ 20
0
votes
0
replies
881
views
ChIPQC stops at chr3 for calculating shift
chipqc
6.7 years ago psudyant • 0
0
votes
0
replies
1.2k
views
ChIPQC: Error in names(res) <- nms
ChIPQC chip-seq
6.5 years ago nbkingsley • 0
50 results • Page 1 of 1
Recent ...
Replies
Comment: DESeq2- Mysterious interaction suppresses DEGs by shaunpeterson • 0
The images I tried to attach didn't attach. Here is the PCA (MDS) of all the samples, with the Cortex outlier highlighed. ![enter image de…
Comment: STRINGdb : error with string_db$plot_network() by damian.szk ▴ 80
ok. Forcing non-secure protocol should not be needed anymore, due to changes in the underlying library. However, I will look at why "HTTP" …
Comment: STRINGdb : error with string_db$plot_network() by ninidea • 0
> Does the vignette produce the same error? No. Anyway, I finally solved the problem. I don't know why, but I removed: protocol='http' fr…
Comment: maSigPro genes from clusters by anne-laure • 0
Hello It is a litlle bit late but I do not get how to extract the genes from each cluster identified by see.genes(sigs$sig.genes$Day4vs…
Comment: STRINGdb : error with string_db$plot_network() by damian.szk ▴ 80
Your code seems ok. Does the vignette produce the same error? [link to STRINGdb R script vignette][1] [1]: https://www.bioconductor.or…
Votes
Answer: Error while installing BiocManager::install("org.Vdahliae.eg.db")
Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Rsubread counting peaks ATACseq
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