Showing : decipher • reset
0
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61
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Memory error while running alignments
DECIPHER Alignment
25 days ago Mihir • 0
0
votes
2
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810
views
Issue when attempting to use output from DECIPHER IDtaxa (pr2 V5) with dada2/phyloseq
DECIPHER taxonomyassignment phyloseq dada2 Pr2V5
updated 5 months ago by • 0 • written 7 months ago by • 0
1
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3
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1.4k
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Non-zero exit status error when installing GenomeInfoDbData
DECIPHER GenomeInfoDbData Bioconductor GenomeInfoDb
written 12 months ago by • 0
0
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2
replies
649
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DECIPHER::idTaxa - broken link to download GTDB r220 (modified) trainig set
DECIPHER
15 months ago makala • 0
0
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0
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742
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LearnTaxa with custom Silva
DECIPHER LearnTaxa
16 months ago Eryn • 0
0
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2
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1.3k
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convert sequences disambiguated with DECIPHER back to FASTA
DECIPHER FASTA disambiguate
written 5.3 years ago by • 0
0
votes
3
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1.4k
views
DECIPHER IdTaxa: Speed up training?
DECIPHER idtaxa
updated 2.2 years ago by ▴ 150 • written 2.2 years ago by ▴ 30
3
votes
5
replies
2.8k
views
Error: 'IdClusters'
DECIPHER
updated 2.3 years ago by ▴ 10 • written 2.6 years ago by • 0
0
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0
replies
669
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Updating 16S training set with LearnTaxa
DECIPHER
2.7 years ago Connor • 0
0
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3
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1.6k
views
Problem with multiple sequence alignment using AlignSeqs
R dada2 DECIPHER
updated 2.7 years ago by ▴ 150 • written 2.7 years ago by • 0
0
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1
reply
1.2k
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OligoArrayAux fails to compile
DECIPHER
2.8 years ago fabian.roger08 ▴ 10
0
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3
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1.8k
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Issue::DesignPrimers DECIPHER
DECIPHER DesignPrimers
updated 4.0 years ago by • 0 • written 4.0 years ago by • 0
0
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1
reply
1.1k
views
ORF finding in DECIPHER
ORF DECIPHER ORFhunteR
updated 4.2 years ago by ▴ 150 • written 4.2 years ago by • 0
0
votes
5
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3.1k
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Do DECIPHER:IdTaxa / dada2::assignTaxonomy work with ambigious reference training set?
decipher dada2
updated 4.2 years ago by ▴ 10 • written 5.6 years ago by • 0
0
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5
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2.2k
views
DECIPHER maximum allowable size
DECIPHER Alignment alig
updated 4.3 years ago by ▴ 150 • written 4.3 years ago by ▴ 10
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0
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1.4k
views
DECIPHER Package on dada2 -Implementing Silva_metaxa2 training set from qza file into a fastq.gz/.Rdata
DECIPHER dada2
4.4 years ago anrongloh • 0
0
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1
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1.2k
views
Defining groups in Decipher by sequence position in the database (FASTA)
DefiningGroups RStudio DECIPHER Specificprimers
updated 4.5 years ago by ▴ 150 • written 4.5 years ago by • 0
0
votes
5
replies
2.4k
views
Program not properly installed/program not accessible by system
R decipher
updated 4.4 years ago by ▴ 150 • written 5.4 years ago by • 0
0
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0
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1.1k
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DECIPHER Probe Design Questions
DECIPHER
4.8 years ago henry1995910343 • 0
0
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2
replies
1.2k
views
insufficient alignment
DECIPHER Alignment
4.8 years ago julius_vn • 0
0
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3
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2.4k
views
DECIPHER save alignement in outputs
msa decipher output prettyPrint
updated 5.0 years ago by ▴ 300 • written 5.0 years ago by • 0
1
vote
7
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2.9k
views
Issue with DECIPHER::IdTaxa
DECIPHER IdTaxa
updated 5 months ago by • 0 • written 5.0 years ago by • 0
0
votes
2
replies
1.4k
views
how to design probes using decipher
R decipher
5.3 years ago hoonhuiyi • 0
0
votes
5
replies
4.7k
views
Error in (function (classes, fdef, mtable)
software error DECIPHER
updated 5.4 years ago by 4.2k • written 5.4 years ago by • 0
0
votes
21
replies
4.2k
views
How to use DECIPHER to design group-specific primers
Decipher
5.4 years ago hoonhuiyi • 0
0
votes
1
reply
1.3k
views
DECIPHER::AlignSeqs fails with a large guide tree
DECIPHER
updated 5.6 years ago by ▴ 150 • written 5.6 years ago by ▴ 10
0
votes
1
reply
1.1k
views
PCR simulation with PNAs
PCR DECIPHER PNA
5.9 years ago marissaruthlee • 0
1
vote
2
replies
2.0k
views
Display BrowseSeqs output in R Notebook?
BrowseSeqs DECIPHER notebook rmarkdown
updated 6.0 years ago by ▴ 150 • written 6.0 years ago by • 0
0
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0
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1.0k
views
Alignment larger than the maximum allowable size
DECIPHER
updated 6.2 years ago by 4.2k • written 6.2 years ago by • 0
2
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4
replies
2.4k
views
How to get sequence homology percent from a multiple sequence alignment in DECIPHER?
decipher r protein alignment
7.3 years ago reubenmcgregor88 • 0
2
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2
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2.7k
views
How to combine sequences from different stringsets?
biostrings decipher
updated 7.6 years ago by ★ 6.6k • written 7.6 years ago by • 0
1
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3
replies
1.7k
views
Transform index to chromosome in DECIPHER package
decipher
updated 7.6 years ago by ▴ 150 • written 7.6 years ago by ▴ 40
5
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7
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2.3k
views
Is it possible to do an alignment to a chosen reference sequence in DECIPHER?
R decipher biostrings
updated 7.7 years ago by ▴ 150 • written 7.7 years ago by • 0
0
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2
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1.4k
views
Is it possible to import many .tsr sequence file into R using bio strings for use in DECIPHER?
r biostrings decipher
7.7 years ago reubenmcgregor88 • 0
2
votes
5
replies
2.3k
views
Colour a phylogenetic tree, based on column in DECIPHER?
r decipher biostrings
updated 7.7 years ago by ▴ 150 • written 7.7 years ago by • 0
2
votes
3
replies
2.4k
views
Is it possible to import a multiple fasta alignemnt (.mfa) file into DECIPHER?
decipher DNA biostrings
updated 7.7 years ago by ▴ 150 • written 7.7 years ago by • 0
0
votes
1
reply
1.6k
views
DECIPHER - AlignSeqs error is.leaf(dend) node stack overflow
decipher alignment
updated 7.9 years ago by ▴ 10 • written 7.9 years ago by • 0
0
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1
reply
2.0k
views
AlignSeqs error: protect(): protection stack overflow
multiplealignment decipher
7.9 years ago c.l.frankling • 0
2
votes
5
replies
2.5k
views
Multiple Sequence Alignment using DNA sequence
msa decipher
8.3 years ago bbista91 ▴ 10
1
vote
5
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2.0k
views
DECIPHER version bug using biocLite()
DECIPHER
9.2 years ago Vinicius Henrique da Silva ▴ 40
0
votes
1
reply
1.2k
views
Possible bug in ConsensusSequence
DECIPHER
updated 9.3 years ago by ▴ 10 • written 9.3 years ago by • 0
0
votes
3
replies
3.1k
views
mt.teststat
multtest DECIPHER multtest DECIPHER
updated 9.6 years ago by ▴ 20 • written 22.4 years ago by ▴ 220
0
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0
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1.8k
views
Job: Bioinformatics Postdoc Position at the IMB, Mainz
Genetics DECIPHER Genetics DECIPHER
11.5 years ago Kathi Zarnack ▴ 110
0
votes
1
reply
1.4k
views
Agi4x44PreProcess: Replicated Genes and Custom Annotation Database
Annotation zebrafish probe DECIPHER Annotation zebrafish probe DECIPHER
updated 15.1 years ago by ★ 7.2k • written 15.1 years ago by ▴ 40
0
votes
1
reply
2.2k
views
boxplot error with expression set using oligo package and Human gene st 1.0 arrays
oligo DECIPHER oligo DECIPHER
updated 15.2 years ago by ★ 4.3k • written 15.2 years ago by ▴ 40
0
votes
0
replies
1.4k
views
Basic Question about gcrma & exporting to excel > (command not working)
Microarray affy gcrma oligo arrayQualityMetrics DECIPHER Microarray affy gcrma oligo
15.2 years ago Dick Beyer ★ 1.4k
0
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0
replies
1.8k
views
'Heat Map for Genes in Dataset' in the '(project name).global.plots.pdf' output of the R-GSEA code
Genetics Clustering DECIPHER Genetics Clustering DECIPHER
15.4 years ago Radek Blatny ▴ 60
0
votes
0
replies
1.9k
views
Post-doc position in Paris
Sequencing Epigenetics Cancer Breast DECIPHER Sequencing Epigenetics Cancer Breast
16.2 years ago Joern Toedling ▴ 450
0
votes
4
replies
1.7k
views
help with large Rgraphviz output
graph DECIPHER graph DECIPHER
updated 19.2 years ago by ★ 7.4k • written 19.2 years ago by ▴ 890
49 results • Page 1 of 1
Recent ...
Replies
Comment: How to account for solvent controls in DESeq2 when comparing follicular vs lutea by snijesh ▴ 200
I would like to clarify whether the command `res <- results(dds, name = "phaseLP.conditionTreated")` is the correct approach to generate …
Comment: How to account for solvent controls in DESeq2 when comparing follicular vs lutea by James W. MacDonald 68k
Not sure I understand. You ask how to do something and then show how one would do so.
Comment: DiffBind getting Fold values of near 0 by littlefishes20 ▴ 10
Same issues. All peaks return to a fold near 0, although they are significant when visualizing in IGV. Please find the MAplot and volcanoPl…
Comment: How to account for solvent controls in DESeq2 when comparing follicular vs lutea by snijesh ▴ 200
I have checked DEGs between Solvent Control (SC) of FP and LP and there are noticebale differences in terms of DEGs. ``` # Checking SC in …
Answer: A0A287BB68 not recognized as UNPROT key in org.Ss.eg.db using AnnotationDbi::sel by James W. MacDonald 68k
Apparently it's been over-ridden by a different UniProtKB ID ``` > select(org.Ss.eg.db, "MYH11", "UNIPROT", "SYMBOL") 'select()' retu…
Votes
How to account for solvent controls in DESeq2 when comparing follicular vs luteal phase?
Answer: How to account for solvent controls in DESeq2 when comparing follicular vs lutea
Answer: How to account for solvent controls in DESeq2 when comparing follicular vs lutea
Comment: Using DESeq2 on single cell RNA Seq data of same cell type but different conditi
Can NanoString data be analyzed using DESeq2?
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