Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
decipher
•
reset
0
votes
0
replies
40
views
Memory error while running alignments
DECIPHER
Alignment
11 days ago
Mihir
• 0
0
votes
2
replies
792
views
Issue when attempting to use output from DECIPHER IDtaxa (pr2 V5) with dada2/phyloseq
DECIPHER
taxonomyassignment
phyloseq
dada2
Pr2V5
updated 5 months ago by
Daniel
• 0 • written 7 months ago by
Maggie
• 0
1
vote
3
replies
1.4k
views
Non-zero exit status error when installing GenomeInfoDbData
DECIPHER
GenomeInfoDbData
Bioconductor
GenomeInfoDb
written 11 months ago by
dbjohnson7
• 0
0
votes
2
replies
637
views
DECIPHER::idTaxa - broken link to download GTDB r220 (modified) trainig set
DECIPHER
15 months ago
makala
• 0
0
votes
0
replies
736
views
LearnTaxa with custom Silva
DECIPHER
LearnTaxa
16 months ago
Eryn
• 0
0
votes
2
replies
1.3k
views
convert sequences disambiguated with DECIPHER back to FASTA
DECIPHER
FASTA
disambiguate
written 5.2 years ago by
joannew
• 0
0
votes
3
replies
1.4k
views
DECIPHER IdTaxa: Speed up training?
DECIPHER
idtaxa
updated 2.1 years ago by
Erik Wright
▴ 150 • written 2.1 years ago by
Till
▴ 30
3
votes
5
replies
2.7k
views
Error: 'IdClusters'
DECIPHER
updated 2.2 years ago by
Ling-Hsiu
▴ 10 • written 2.5 years ago by
julieta.micorriza
• 0
0
votes
0
replies
661
views
Updating 16S training set with LearnTaxa
DECIPHER
2.7 years ago
Connor
• 0
0
votes
3
replies
1.6k
views
Problem with multiple sequence alignment using AlignSeqs
R
dada2
DECIPHER
updated 2.7 years ago by
Erik Wright
▴ 150 • written 2.7 years ago by
Nelli
• 0
0
votes
1
reply
1.2k
views
OligoArrayAux fails to compile
DECIPHER
2.8 years ago • updated 2.7 years ago
fabian.roger08
▴ 10
0
votes
3
replies
1.8k
views
Issue::DesignPrimers DECIPHER
DECIPHER
DesignPrimers
updated 3.9 years ago by
slwmartin
• 0 • written 3.9 years ago by
Mailys
• 0
0
votes
1
reply
1.1k
views
ORF finding in DECIPHER
ORF
DECIPHER
ORFhunteR
updated 4.2 years ago by
Erik Wright
▴ 150 • written 4.2 years ago by
tkirkland
• 0
0
votes
5
replies
3.0k
views
Do DECIPHER:IdTaxa / dada2::assignTaxonomy work with ambigious reference training set?
decipher
dada2
updated 4.2 years ago by
fabian.roger08
▴ 10 • written 5.5 years ago by
fabian.roger
• 0
0
votes
5
replies
2.2k
views
DECIPHER maximum allowable size
DECIPHER
Alignment
alig
updated 4.3 years ago by
Erik Wright
▴ 150 • written 4.3 years ago by
curiousmind007
▴ 10
0
votes
0
replies
1.4k
views
DECIPHER Package on dada2 -Implementing Silva_metaxa2 training set from qza file into a fastq.gz/.Rdata
DECIPHER
dada2
4.4 years ago
anrongloh
• 0
0
votes
1
reply
1.2k
views
Defining groups in Decipher by sequence position in the database (FASTA)
DefiningGroups
RStudio
DECIPHER
Specificprimers
updated 4.5 years ago by
Erik Wright
▴ 150 • written 4.5 years ago by
noeliaruizalonso23
• 0
0
votes
5
replies
2.4k
views
Program not properly installed/program not accessible by system
R
decipher
updated 4.4 years ago by
Erik Wright
▴ 150 • written 5.3 years ago by
hoonhuiyi
• 0
0
votes
0
replies
1.1k
views
DECIPHER Probe Design Questions
DECIPHER
4.7 years ago
henry1995910343
• 0
0
votes
2
replies
1.1k
views
insufficient alignment
DECIPHER
Alignment
4.8 years ago
julius_vn
• 0
0
votes
3
replies
2.4k
views
DECIPHER save alignement in outputs
msa
decipher
output
prettyPrint
updated 4.9 years ago by
UBod
▴ 300 • written 4.9 years ago by
matamunee
• 0
1
vote
7
replies
2.9k
views
Issue with DECIPHER::IdTaxa
DECIPHER
IdTaxa
updated 5 months ago by
Daniel
• 0 • written 5.0 years ago by
sebastian.mynott
• 0
0
votes
2
replies
1.4k
views
how to design probes using decipher
R
decipher
5.3 years ago
hoonhuiyi
• 0
0
votes
5
replies
4.7k
views
Error in (function (classes, fdef, mtable)
software error
DECIPHER
updated 5.3 years ago by
shepherl
4.2k • written 5.3 years ago by
hoonhuiyi
• 0
0
votes
21
replies
4.2k
views
How to use DECIPHER to design group-specific primers
Decipher
5.3 years ago
hoonhuiyi
• 0
0
votes
1
reply
1.3k
views
DECIPHER::AlignSeqs fails with a large guide tree
DECIPHER
updated 5.6 years ago by
Erik Wright
▴ 150 • written 5.6 years ago by
brendan.furneaux
▴ 10
0
votes
1
reply
1.1k
views
PCR simulation with PNAs
PCR
DECIPHER
PNA
5.9 years ago
marissaruthlee
• 0
1
vote
2
replies
2.0k
views
Display BrowseSeqs output in R Notebook?
BrowseSeqs
DECIPHER
notebook
rmarkdown
updated 6.0 years ago by
Erik Wright
▴ 150 • written 6.0 years ago by
lauren.fitch
• 0
0
votes
0
replies
1.0k
views
Alignment larger than the maximum allowable size
DECIPHER
updated 6.1 years ago by
shepherl
4.2k • written 6.1 years ago by
cmasembe
• 0
2
votes
4
replies
2.4k
views
How to get sequence homology percent from a multiple sequence alignment in DECIPHER?
decipher
r
protein alignment
7.3 years ago
reubenmcgregor88
• 0
2
votes
2
replies
2.7k
views
How to combine sequences from different stringsets?
biostrings
decipher
updated 7.5 years ago by
Mike Smith
★ 6.6k • written 7.5 years ago by
reubenmcgregor88
• 0
1
vote
3
replies
1.7k
views
Transform index to chromosome in DECIPHER package
decipher
updated 7.6 years ago by
Erik Wright
▴ 150 • written 7.6 years ago by
Vinicius Henrique da Silva
▴ 40
5
votes
7
replies
2.3k
views
Is it possible to do an alignment to a chosen reference sequence in DECIPHER?
R
decipher
biostrings
updated 7.6 years ago by
Erik Wright
▴ 150 • written 7.6 years ago by
reubenmcgregor88
• 0
0
votes
2
replies
1.4k
views
Is it possible to import many .tsr sequence file into R using bio strings for use in DECIPHER?
r
biostrings
decipher
7.6 years ago
reubenmcgregor88
• 0
2
votes
5
replies
2.3k
views
Colour a phylogenetic tree, based on column in DECIPHER?
r
decipher
biostrings
updated 7.6 years ago by
Erik Wright
▴ 150 • written 7.6 years ago by
reubenmcgregor88
• 0
2
votes
3
replies
2.3k
views
Is it possible to import a multiple fasta alignemnt (.mfa) file into DECIPHER?
decipher
DNA
biostrings
updated 7.7 years ago by
Erik Wright
▴ 150 • written 7.7 years ago by
reubenmcgregor88
• 0
0
votes
1
reply
1.6k
views
DECIPHER - AlignSeqs error is.leaf(dend) node stack overflow
decipher
alignment
updated 7.8 years ago by
Erik Wright
▴ 10 • written 7.8 years ago by
emma.berdan
• 0
0
votes
1
reply
2.0k
views
AlignSeqs error: protect(): protection stack overflow
multiplealignment
decipher
7.9 years ago
c.l.frankling
• 0
2
votes
5
replies
2.5k
views
Multiple Sequence Alignment using DNA sequence
msa
decipher
8.2 years ago
bbista91
▴ 10
1
vote
5
replies
2.0k
views
DECIPHER version bug using biocLite()
DECIPHER
9.2 years ago
Vinicius Henrique da Silva
▴ 40
0
votes
1
reply
1.2k
views
Possible bug in ConsensusSequence
DECIPHER
updated 9.3 years ago by
Erik Wright
▴ 10 • written 9.3 years ago by
rob.lanfear
• 0
0
votes
3
replies
3.1k
views
mt.teststat
multtest
DECIPHER
multtest
DECIPHER
updated 9.6 years ago by
Smeeta Shrestha
▴ 20 • written 22.4 years ago by
Park, Richard
▴ 220
0
votes
0
replies
1.8k
views
Job: Bioinformatics Postdoc Position at the IMB, Mainz
Genetics
DECIPHER
Genetics
DECIPHER
11.4 years ago
Kathi Zarnack
▴ 110
0
votes
1
reply
1.4k
views
Agi4x44PreProcess: Replicated Genes and Custom Annotation Database
Annotation
zebrafish
probe
DECIPHER
Annotation
zebrafish
probe
DECIPHER
updated 15.0 years ago by
Marc Carlson
★ 7.2k • written 15.0 years ago by
Samantha England
▴ 40
0
votes
1
reply
2.1k
views
boxplot error with expression set using oligo package and Human gene st 1.0 arrays
oligo
DECIPHER
oligo
DECIPHER
updated 15.2 years ago by
Benilton Carvalho
★ 4.3k • written 15.2 years ago by
jos matejus
▴ 40
0
votes
0
replies
1.4k
views
Basic Question about gcrma & exporting to excel > (command not working)
Microarray
affy
gcrma
oligo
arrayQualityMetrics
DECIPHER
Microarray
affy
gcrma
oligo
15.2 years ago
Dick Beyer
★ 1.4k
0
votes
0
replies
1.8k
views
'Heat Map for Genes in Dataset' in the '(project name).global.plots.pdf' output of the R-GSEA code
Genetics
Clustering
DECIPHER
Genetics
Clustering
DECIPHER
15.4 years ago
Radek Blatny
▴ 60
0
votes
0
replies
1.9k
views
Post-doc position in Paris
Sequencing
Epigenetics
Cancer
Breast
DECIPHER
Sequencing
Epigenetics
Cancer
Breast
16.1 years ago
Joern Toedling
▴ 450
0
votes
4
replies
1.7k
views
help with large Rgraphviz output
graph
DECIPHER
graph
DECIPHER
updated 19.2 years ago by
Seth Falcon
★ 7.4k • written 19.2 years ago by
Kimpel, Mark W
▴ 890
49 results • Page
1 of 1
Recent ...
Replies
Comment: p-adjusted values in multiple comparisons
by
Gordon Smyth
52k
plotMDS() is best run on the original DGEList object, i.e., on the input to voom rather than on the output. See the example analyses in the…
Comment: EuroBioC2024 abstract submission is open!
by
rajilrfaze
• 0
[Sportzfy smooth streaming APK][1] ensures zero buffering during your favorite games. [1]: https://sportzfytvapk.com.co/
Comment: p-adjusted values in multiple comparisons
by
ocanorocabayera
• 0
Thank you Gordon for your thorough reply. It seems when MDS-plotting the obtained object from 'voom', that the points do not cluster togeth…
Comment: Are voomByGroup and voomLmFit compatible?
by
Gordon Smyth
52k
Not sure what "points" you are referring to, or what you mean by them being "weighted".
Answer: p-adjusted values in multiple comparisons
by
Gordon Smyth
52k
If your data was completely random, with no truly differentially expressed (DE) genes, then you would expect to get nearly 5% of the p-valu…
Votes
Answer: p-adjusted values in multiple comparisons
Comment: Very different log2 Fold changes with DESeq2 and explict calculation
Answer: (Why) do limma's confidence intervals depend on topTable's p.value argument?
Answer: (Why) do limma's confidence intervals depend on topTable's p.value argument?
Answer: Very different log2 Fold changes with DESeq2 and explict calculation
Awards
• All
Popular Question
to
Pablo marin-garcia
▴ 90
Popular Question
to
mb2subi
• 0
Popular Question
to
altuda
▴ 10
Popular Question
to
Matthew Thornton
▴ 380
Popular Question
to
Dario Strbenac
★ 1.6k
Locations
• All
WEHI, Melbourne, Australia,
4 minutes ago
The city by the bay,
2 hours ago
WEHI, Melbourne, Australia,
4 hours ago
Pittsburgh, United States,
4 hours ago
Barcelona, Spain,
8 hours ago
Traffic: 353 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6