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decipher
•
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0
votes
0
replies
91
views
Issue when attempting to use output from DECIPHER IDtaxa (pr2 V5) with dada2/phyloseq
DECIPHER
taxonomyassignment
phyloseq
dada2
Pr2V5
6 weeks ago
Maggie
• 0
1
vote
3
replies
1.0k
views
Non-zero exit status error when installing GenomeInfoDbData
DECIPHER
GenomeInfoDbData
Bioconductor
GenomeInfoDb
written 6 months ago by
dbjohnson7
• 0
0
votes
2
replies
466
views
DECIPHER::idTaxa - broken link to download GTDB r220 (modified) trainig set
DECIPHER
9 months ago
makala
• 0
0
votes
0
replies
563
views
LearnTaxa with custom Silva
DECIPHER
LearnTaxa
10 months ago
Eryn
• 0
0
votes
2
replies
1.2k
views
convert sequences disambiguated with DECIPHER back to FASTA
DECIPHER
FASTA
disambiguate
written 4.7 years ago by
joannew
• 0
0
votes
3
replies
1.2k
views
DECIPHER IdTaxa: Speed up training?
DECIPHER
idtaxa
updated 19 months ago by
Erik Wright
▴ 150 • written 20 months ago by
Till
▴ 30
3
votes
5
replies
2.4k
views
Error: 'IdClusters'
DECIPHER
updated 21 months ago by
Ling-Hsiu
▴ 10 • written 2.0 years ago by
julieta.micorriza
• 0
0
votes
0
replies
549
views
Updating 16S training set with LearnTaxa
DECIPHER
2.2 years ago
Connor
• 0
0
votes
3
replies
1.4k
views
Problem with multiple sequence alignment using AlignSeqs
R
dada2
DECIPHER
updated 2.2 years ago by
Erik Wright
▴ 150 • written 2.2 years ago by
Nelli
• 0
0
votes
1
reply
1.0k
views
OligoArrayAux fails to compile
DECIPHER
2.3 years ago • updated 2.2 years ago
fabian.roger08
▴ 10
0
votes
3
replies
1.6k
views
Issue::DesignPrimers DECIPHER
DECIPHER
DesignPrimers
updated 3.4 years ago by
slwmartin
• 0 • written 3.4 years ago by
Mailys
• 0
0
votes
1
reply
991
views
ORF finding in DECIPHER
ORF
DECIPHER
ORFhunteR
updated 3.7 years ago by
Erik Wright
▴ 150 • written 3.7 years ago by
tkirkland
• 0
0
votes
5
replies
2.7k
views
Do DECIPHER:IdTaxa / dada2::assignTaxonomy work with ambigious reference training set?
decipher
dada2
updated 3.7 years ago by
fabian.roger08
▴ 10 • written 5.0 years ago by
fabian.roger
• 0
0
votes
5
replies
2.0k
views
DECIPHER maximum allowable size
DECIPHER
Alignment
alig
updated 3.8 years ago by
Erik Wright
▴ 150 • written 3.8 years ago by
curiousmind007
▴ 10
0
votes
0
replies
1.2k
views
DECIPHER Package on dada2 -Implementing Silva_metaxa2 training set from qza file into a fastq.gz/.Rdata
DECIPHER
dada2
3.9 years ago
anrongloh
• 0
0
votes
1
reply
1.1k
views
Defining groups in Decipher by sequence position in the database (FASTA)
DefiningGroups
RStudio
DECIPHER
Specificprimers
updated 4.0 years ago by
Erik Wright
▴ 150 • written 4.0 years ago by
noeliaruizalonso23
• 0
0
votes
5
replies
2.2k
views
Program not properly installed/program not accessible by system
R
decipher
updated 3.9 years ago by
Erik Wright
▴ 150 • written 4.8 years ago by
hoonhuiyi
• 0
0
votes
0
replies
1.0k
views
DECIPHER Probe Design Questions
DECIPHER
4.3 years ago
henry1995910343
• 0
0
votes
2
replies
1.0k
views
insufficient alignment
DECIPHER
Alignment
4.3 years ago
julius_vn
• 0
0
votes
3
replies
2.2k
views
DECIPHER save alignement in outputs
msa
decipher
output
prettyPrint
updated 4.4 years ago by
UBod
▴ 300 • written 4.4 years ago by
matamunee
• 0
1
vote
6
replies
2.3k
views
Issue with DECIPHER::IdTaxa
DECIPHER
IdTaxa
4.5 years ago
sebastian.mynott
• 0
0
votes
2
replies
1.2k
views
how to design probes using decipher
R
decipher
4.8 years ago
hoonhuiyi
• 0
0
votes
5
replies
4.5k
views
Error in (function (classes, fdef, mtable)
software error
DECIPHER
updated 4.8 years ago by
shepherl
4.1k • written 4.8 years ago by
hoonhuiyi
• 0
0
votes
21
replies
3.6k
views
How to use DECIPHER to design group-specific primers
Decipher
4.9 years ago
hoonhuiyi
• 0
0
votes
1
reply
1.2k
views
DECIPHER::AlignSeqs fails with a large guide tree
DECIPHER
updated 5.1 years ago by
Erik Wright
▴ 150 • written 5.1 years ago by
brendan.furneaux
▴ 10
0
votes
1
reply
942
views
PCR simulation with PNAs
PCR
DECIPHER
PNA
5.4 years ago
marissaruthlee
• 0
1
vote
2
replies
1.8k
views
Display BrowseSeqs output in R Notebook?
BrowseSeqs
DECIPHER
notebook
rmarkdown
updated 5.5 years ago by
Erik Wright
▴ 150 • written 5.5 years ago by
lauren.fitch
• 0
0
votes
0
replies
916
views
Alignment larger than the maximum allowable size
DECIPHER
updated 5.6 years ago by
shepherl
4.1k • written 5.6 years ago by
cmasembe
• 0
2
votes
4
replies
2.2k
views
How to get sequence homology percent from a multiple sequence alignment in DECIPHER?
decipher
r
protein alignment
6.8 years ago
reubenmcgregor88
• 0
2
votes
2
replies
2.4k
views
How to combine sequences from different stringsets?
biostrings
decipher
updated 7.0 years ago by
Mike Smith
★ 6.6k • written 7.0 years ago by
reubenmcgregor88
• 0
1
vote
3
replies
1.5k
views
Transform index to chromosome in DECIPHER package
decipher
updated 7.1 years ago by
Erik Wright
▴ 150 • written 7.1 years ago by
Vinicius Henrique da Silva
▴ 40
5
votes
7
replies
2.0k
views
Is it possible to do an alignment to a chosen reference sequence in DECIPHER?
R
decipher
biostrings
updated 7.1 years ago by
Erik Wright
▴ 150 • written 7.1 years ago by
reubenmcgregor88
• 0
0
votes
2
replies
1.3k
views
Is it possible to import many .tsr sequence file into R using bio strings for use in DECIPHER?
r
biostrings
decipher
7.1 years ago
reubenmcgregor88
• 0
2
votes
5
replies
2.1k
views
Colour a phylogenetic tree, based on column in DECIPHER?
r
decipher
biostrings
updated 7.1 years ago by
Erik Wright
▴ 150 • written 7.1 years ago by
reubenmcgregor88
• 0
2
votes
3
replies
2.2k
views
Is it possible to import a multiple fasta alignemnt (.mfa) file into DECIPHER?
decipher
DNA
biostrings
updated 7.2 years ago by
Erik Wright
▴ 150 • written 7.2 years ago by
reubenmcgregor88
• 0
0
votes
1
reply
1.5k
views
DECIPHER - AlignSeqs error is.leaf(dend) node stack overflow
decipher
alignment
updated 7.3 years ago by
Erik Wright
▴ 10 • written 7.3 years ago by
emma.berdan
• 0
0
votes
1
reply
1.9k
views
AlignSeqs error: protect(): protection stack overflow
multiplealignment
decipher
7.4 years ago
c.l.frankling
• 0
2
votes
5
replies
2.2k
views
Multiple Sequence Alignment using DNA sequence
msa
decipher
7.8 years ago
bbista91
▴ 10
1
vote
5
replies
1.8k
views
DECIPHER version bug using biocLite()
DECIPHER
8.7 years ago
Vinicius Henrique da Silva
▴ 40
0
votes
1
reply
1.1k
views
Possible bug in ConsensusSequence
DECIPHER
updated 8.8 years ago by
Erik Wright
▴ 10 • written 8.8 years ago by
rob.lanfear
• 0
0
votes
3
replies
3.0k
views
mt.teststat
multtest
DECIPHER
multtest
DECIPHER
updated 9.1 years ago by
Smeeta Shrestha
▴ 20 • written 21.9 years ago by
Park, Richard
▴ 220
0
votes
0
replies
1.7k
views
Job: Bioinformatics Postdoc Position at the IMB, Mainz
Genetics
DECIPHER
Genetics
DECIPHER
10.9 years ago
Kathi Zarnack
▴ 110
0
votes
1
reply
1.3k
views
Agi4x44PreProcess: Replicated Genes and Custom Annotation Database
Annotation
zebrafish
probe
DECIPHER
Annotation
zebrafish
probe
DECIPHER
updated 14.6 years ago by
Marc Carlson
★ 7.2k • written 14.6 years ago by
Samantha England
▴ 40
0
votes
1
reply
2.0k
views
boxplot error with expression set using oligo package and Human gene st 1.0 arrays
oligo
DECIPHER
oligo
DECIPHER
updated 14.7 years ago by
Benilton Carvalho
★ 4.3k • written 14.7 years ago by
jos matejus
▴ 40
0
votes
0
replies
1.3k
views
Basic Question about gcrma & exporting to excel > (command not working)
Microarray
affy
gcrma
oligo
arrayQualityMetrics
DECIPHER
Microarray
affy
gcrma
oligo
14.7 years ago
Dick Beyer
★ 1.4k
0
votes
0
replies
1.7k
views
'Heat Map for Genes in Dataset' in the '(project name).global.plots.pdf' output of the R-GSEA code
Genetics
Clustering
DECIPHER
Genetics
Clustering
DECIPHER
14.9 years ago
Radek Blatny
▴ 60
0
votes
0
replies
1.8k
views
Post-doc position in Paris
Sequencing
Epigenetics
Cancer
Breast
DECIPHER
Sequencing
Epigenetics
Cancer
Breast
15.6 years ago
Joern Toedling
▴ 450
0
votes
4
replies
1.6k
views
help with large Rgraphviz output
graph
DECIPHER
graph
DECIPHER
updated 18.7 years ago by
Seth Falcon
★ 7.4k • written 18.7 years ago by
Kimpel, Mark W
▴ 890
48 results • Page
1 of 1
Recent ...
Replies
Comment: How to formulate 2 factor nested design in DESeq2
by
Mariane
• 0
Hi JK Kim, I'm having a problem similar to the one you reported. Could you please tell me how you solved this problem? Thanks
Comment: batch effect removal for agilent microarray data
by
gaye.yilmaz
• 0
Thank you
Answer: Pathview visualisation not including positive log2 fold changes
by
James W. MacDonald
68k
Without providing a self-contained example, nobody can tell you if/where you went wrong. Since you get a KEGG pathway with some of the gene…
Comment: Differential variance analysis - can i use deseq2
by
Marwan
• 0
Thanks Michael for your answer, i didnt mean to use Deseq2 directly for the variance testing, but more like asking if using the (VST) data…
Answer: Differential variance analysis - can i use deseq2
by
Michael Love
43k
We don't have a test of differential variance but other Bioconductor packages can, check similar posts (even on the right side bar) or use …
Votes
Answer: Differential expression of protein coding ENSGs (Ensembl IDs) | When to biomaRt?
Suggesting changing the "reply-to" field to the mailing list address.
Answer: UniProt.ws query for single UniRef90 ID takes several minutes
A: How to extract DESeq2 results for an interaction design
Comment: how should I apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K?
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