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experimentdata
•
reset
0
votes
11
replies
1.6k
views
News:
List of Deprecated Packages for Bioc3.19
Release
Devel
ExperimentData
Software
8 months ago • updated 4 weeks ago
shepherl
4.1k
1
vote
8
replies
1.7k
views
News:
Final List of Deprecated Package Bioc 3.9
deprecation
release
software
experimentData
News
written 5.7 years ago by
shepherl
4.1k
1
vote
1
reply
919
views
Confused about design for RNA seq experiment
RNAseq
ExperimentData
RNAseq123
RNA
ExperimentalDesign
updated 2.2 years ago by
ATpoint
★ 4.5k • written 2.2 years ago by
Mohamed
▴ 30
0
votes
5
replies
1.6k
views
News:
Final List of Deprecated Packages for Bioc3.14
ExperimentData
Deprecation
Software
Release
Workflow
3.1 years ago • updated 2.6 years ago
shepherl
4.1k
2
votes
2
replies
1.7k
views
News:
Final List of Deprecated Packages for Bioc3.13
Workflow
Software
ExperimentData
Deprecation
4.0 years ago • updated 3.5 years ago
shepherl
4.1k
1
vote
2
replies
1.6k
views
News:
Final List of Deprecated Packages for Bioc3.12
annotation
software
experimentdata
deprecated
News
4.1 years ago
shepherl
4.1k
0
votes
0
replies
1.0k
views
News:
List of Deprecated Packages Bioc 3.11
annotation
experimentdata
software
release
deprecation
News
4.7 years ago
shepherl
4.1k
0
votes
1
reply
1.0k
views
News:
List of Deprecated Packages Bioc 3.11
annotation
experimentdata
software
release
deprecation
News
4.9 years ago
shepherl
4.1k
0
votes
0
replies
1.0k
views
News:
List of Deprecated Packages Bioc 3.11
annotation
experimentdata
software
release
deprecation
News
5.0 years ago
shepherl
4.1k
0
votes
2
replies
2.0k
views
News:
Final List of Deprecated Packages for Bioc3.10
annotation
experimentdata
deprecation
release
software
News
5.1 years ago • updated 5.0 years ago
shepherl
4.1k
0
votes
0
replies
1.0k
views
News:
List of Deprecated Packages Bioc 3.10
annotation
experimentdata
software
release
deprecation
News
5.2 years ago • updated 5.1 years ago
shepherl
4.1k
0
votes
1
reply
1.2k
views
News:
List of Deprecated Packages Bioc 3.10
annotation
experimentdata
software
deprecation
release
News
5.3 years ago • updated 5.2 years ago
shepherl
4.1k
0
votes
3
replies
1.3k
views
News:
List of Deprecated Packages Bioc 3.10
annotation
experimentdata
software
release
deprecation
News
5.5 years ago
shepherl
4.1k
0
votes
1
reply
1.0k
views
News:
Initial List of Deprecated Packages Bioc 3.10
software
experimentdata
release
deprecation
annotation
News
5.5 years ago
shepherl
4.1k
0
votes
1
reply
1.4k
views
News:
List of Deprecated Package Bioc 3.9
deprecate
release
devel
software
experimentdata
News
5.8 years ago
shepherl
4.1k
0
votes
0
replies
1.2k
views
News:
DEADLINE: All packages to pass R CMD build and R CMD check
release
software
experimentdata
workflows
News
6.6 years ago
shepherl
4.1k
0
votes
0
replies
1.2k
views
How to load additional data from fcs files
fcs
concentration
experimentdata
7.6 years ago
jurg.spaak
• 0
0
votes
1
reply
1.8k
views
Extract the gate in the data file (fcs file) from MoFlo Astrios
gate
cytometry
experimentdata
stategy
MoFlo Astrios
7.8 years ago
cr
• 0
1
vote
2
replies
1.3k
views
Submitting an experimental data package
submit package
experimentdata
updated 8.7 years ago by
Martin Morgan
25k • written 8.7 years ago by
mark.dunning
▴ 20
1
vote
3
replies
1.7k
views
How to update the data in an experimental data package
experimentdata
update
updated 10.2 years ago by
Laurent Gatto
1.6k • written 10.2 years ago by
paul.theodor.pyl
▴ 10
0
votes
2
replies
3.3k
views
Biobase - Error: ExpressionSet
Microarray
Annotation
GO
ExperimentData
Biobase
Microarray
Annotation
GO
ExperimentData
updated 11.1 years ago by
Laurent Gatto
1.6k • written 11.1 years ago by
Lisa Cohen
▴ 50
0
votes
4
replies
9.7k
views
Error while building ExpressionSet from scratch....
ExperimentData
LMGene
ExperimentData
LMGene
updated 13.0 years ago by
Martin Morgan
25k • written 13.0 years ago by
Bas Jansen
▴ 150
0
votes
1
reply
1.5k
views
justRMA {affy} error
Annotation
ExperimentData
cdf
Annotation
ExperimentData
cdf
updated 13.2 years ago by
Martin Morgan
25k • written 13.2 years ago by
Julio Alejandro Di Rienzo
▴ 10
0
votes
2
replies
2.2k
views
RMA implemented in oligo package vs affy package
ExperimentData
cdf
affy
PROcess
oligo
ExperimentData
cdf
affy
PROcess
oligo
15.6 years ago
heyi xiao
▴ 360
0
votes
0
replies
1.5k
views
Beadarray error: comparison of types not implemented
Annotation
ExperimentData
beadarray
Annotation
ExperimentData
beadarray
15.7 years ago
Anne-Kristin Stavrum
▴ 10
0
votes
0
replies
1.4k
views
Beadarray error: comparison of types not implemented
Annotation
ExperimentData
Cancer
Biobase
beadarray
Annotation
ExperimentData
Cancer
15.7 years ago
Martin Morgan
25k
0
votes
3
replies
1.8k
views
ExpressionSet or MAList
Annotation
ExperimentData
Cancer
Annotation
ExperimentData
Cancer
updated 16.6 years ago by
Gordon Smyth
51k • written 16.6 years ago by
Daniel Brewer
★ 1.9k
0
votes
2
replies
1.8k
views
ReadAffy fails 64bit linux Error in .nextMethod(e1, e2) :
Annotation
ExperimentData
cdf
affy
Annotation
ExperimentData
cdf
affy
updated 16.7 years ago by
James W. MacDonald
67k • written 16.7 years ago by
Langdon W B
▴ 20
0
votes
3
replies
2.3k
views
ReadAffy Error
Annotation
ExperimentData
cdf
affy
affyio
Annotation
ExperimentData
cdf
affy
affyio
updated 17.2 years ago by
Sylvia.Merk@ukmuenster.de
▴ 60 • written 17.2 years ago by
Markus Schmidberger
▴ 380
0
votes
6
replies
3.6k
views
how to convert a AffyBatch into ExpressionSet object ?
Annotation
GO
Survival
ExperimentData
cdf
DynDoc
genefilter
geneplotter
multtest
affy
GO
updated 17.3 years ago by
Weiyin Zhou
▴ 220 • written 17.3 years ago by
Jenny Drnevich
★ 2.2k
0
votes
0
replies
2.0k
views
how to convert a AffyBatch into ExpressionSet object ?
Annotation
GO
Survival
ExperimentData
cdf
DynDoc
genefilter
geneplotter
multtest
affy
GO
17.3 years ago
Min Wook Kim
▴ 20
31 results • Page
1 of 1
Recent ...
Replies
Comment: CleanUpRNAseq with a GTF that is missing mitochondria annotation data
by
rcreed
• 0
The updated version worked well on my data. Thank you!
Answer: DE analysis on Single cell RNA Seq time course data (using pseudotime) with 5 di
by
James W. MacDonald
67k
The two contrasts at the bottom are identical but for the sign of the logFC, so you should expect the same results (except for flipped sign…
Comment: Identical samples after deseq2 batch effect removal
by
Michael Love
42k
Oh, i didn't realize there is another method in the mix here. I would not necessarily trust this "batch correction" method, and suspect o…
Comment: Identifying potentially associated gene set to drug response using GSVA
by
Kent
• 0
Hi @robertc thanks for the reply. I should have explained to you the context first. I am testing over a hundred drugs on patient samples (s…
Answer: BiocNeighbours Utility for k-Nearest Neighbour Classification
by
James W. MacDonald
67k
You can easily answer this question yourself. ``` > library(BiocPkgTools) Loading required package: htmlwidgets > depdf <- buildPkgDe…
Votes
Answer: CleanUpRNAseq with a GTF that is missing mitochondria annotation data
Answer: CleanUpRNAseq with a GTF that is missing mitochondria annotation data
A: TopGO: How to retrieve the gene list related to a GO ID ?
A: Error in DESeqDataSet : some values in assay are not integers
A: correcting the batch effects in Limma and SVA
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