updated 7.8 years ago by
David ROUX
▴
20
•
written 7.9 years ago by
alireza_sharifian_10
▴
10
8
votes
11
replies
9.4k
views
5
votes
12
replies
6.4k
views
updated 6.0 years ago by
Gordon Smyth
50k
•
written 6.0 years ago by
Biologist
▴
110
1
vote
3
replies
5.2k
views
updated 6.7 years ago by
Wolfgang Huber
★
13k
•
written 6.7 years ago by
heikki.sarin
▴
10
2
votes
7
replies
2.7k
views
9.1 years ago
cpcantalapiedra
•
0
3
votes
10
replies
2.3k
views
2
votes
4
replies
2.2k
views
updated 9.0 years ago by
James W. MacDonald
65k
•
written 9.0 years ago by
ablanchetcohen
•
0
3
votes
5
replies
2.1k
views
updated 4.1 years ago by
Michael Love
41k
•
written 4.1 years ago by
svlachavas
▴
830
1
vote
2
replies
2.1k
views
updated 7.7 years ago by
Gordon Smyth
50k
•
written 7.7 years ago by
lynski008
•
0
5
votes
12
replies
1.9k
views
updated 8.1 years ago by
Ryan C. Thompson
★
7.9k
•
written 8.1 years ago by
Shamim Sarhadi
▴
20
1
vote
6
replies
1.9k
views
updated 6.9 years ago by
Wolfgang Huber
★
13k
•
written 6.9 years ago by
n.lu
•
0
5
votes
8
replies
1.9k
views
19 months ago • updated 17 months ago
mohammedtoufiq91
▴
10
2
votes
4
replies
1.7k
views
updated 5.4 years ago by
Ryan C. Thompson
★
7.9k
•
written 5.4 years ago by
rproendo
▴
20
6
votes
4
replies
1.7k
views
updated 7.7 years ago by
Steve Lianoglou
★
13k
•
written 7.7 years ago by
rattigak
•
0
0
votes
2
replies
1.7k
views
1
vote
1
reply
1.5k
views
4
votes
8
replies
1.5k
views
3
votes
11
replies
1.3k
views
updated 10 months ago by
Gordon Smyth
50k
•
written 10 months ago by
alexia.brunel
•
0
3
votes
4
replies
1.3k
views
7.6 years ago
Jurat Shahidin
▴
80
5
votes
7
replies
1.2k
views
updated 11 months ago by
Gordon Smyth
50k
•
written 11 months ago by
mohammedtoufiq91
▴
10
0
votes
2
replies
1.2k
views
updated 6.2 years ago by
Michael Love
41k
•
written 6.2 years ago by
A
▴
40
1
vote
2
replies
1.1k
views
updated 5.9 years ago by
Gordon Smyth
50k
•
written 5.9 years ago by
Aurora
▴
20
0
votes
1
reply
1.0k
views
0
votes
2
replies
1.0k
views
2
votes
2
replies
1.0k
views
updated 6.9 years ago by
Steve Lianoglou
★
13k
•
written 6.9 years ago by
jamie.gearing
▴
60
0
votes
0
replies
976
views
4.3 years ago
jam526
•
0
1
vote
1
reply
831
views
updated 5.8 years ago by
Michael Love
41k
•
written 5.8 years ago by
mnaymik
•
0
0
votes
1
reply
707
views
updated 5.4 years ago by
James W. MacDonald
65k
•
written 5.4 years ago by
n_h_78
•
0
0
votes
0
replies
498
views
20 months ago
Fatemeh
•
0
Recent ...
Replies
Answer: Deseq2. decontXcounts not integers. Useful alternative?
by
Michael Love
41k
Another option would be to put the per sample estimated contamination in the design. This is for example how RUV etc help remove spurious D…
Answer: ATACseq merge peaks
by
ATpoint
★
4.0k
That depends on your analysis. Typically, for differential analysis (and convenience) you would produce a single set of peaks (e.g. by merg…
Comment: Deseq2. decontXcounts not integers. Useful alternative?
by
camp
▴
10
Yes, @atpoint is correct. decontX decontaminated counts are not integers due to the way the variation inference algorithm works, but you ca…
Comment: Deseq2. decontXcounts not integers. Useful alternative?
by
ATpoint
★
4.0k
I do not know this decontamination tool you use but generally:
If these counts are basically "corrected" raw counts in the sense that they'…
Answer: Improving the design matrices vignette in RNAseq123
by
Gordon Smyth
50k
Thanks to Shian Su, we have confirmed that the problem in the design matrices vignette html is caused by a bug in knitr 1.44 (to do with sp…
Votes
Awards
• All
Locations
• All
Switzerland, 6 minutes ago
Germany, 7 minutes ago
United Kingdom, 9 minutes ago
Germany, 15 minutes ago
United States, 25 minutes ago
Switzerland, 6 minutes ago
Germany, 7 minutes ago
United Kingdom, 9 minutes ago
Germany, 15 minutes ago
United States, 25 minutes ago
Traffic: 1042 users visited in the last hour
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6