Showing : flowCore • reset
1
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5
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Flow cytometry optimization of transformation parameters
flow Cytometry flowCore flowTrans
6.7 years ago carlos.x.martinez-fleites • 0
1
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2
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1.4k
views
gatingML examples needed
flowCore flowUtils gatingML
updated 6.8 years ago by ★ 1.3k • written 6.8 years ago by ▴ 10
1
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6
replies
3.1k
views
flowCore: uneven number of tokens / The last keyword is dropped.
flowCore
updated 6.8 years ago by ▴ 360 • written 6.8 years ago by • 0
2
votes
5
replies
1.9k
views
flowCore filterSummary toTable() function not working
flowCore flowcore flow cytometry
updated 6.8 years ago by ▴ 310 • written 6.8 years ago by • 0
0
votes
1
reply
1.5k
views
Error after assignPrelim(), CyTOF compenstation
CATALYST flowCore assignPrelim Error in vapply read.FCS
6.8 years ago j.krop • 0
1
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1
reply
1.8k
views
read.FCS memory limit? - $PnRNAis larger than R's numeric limit
flowCore read.FCS memory_limit
6.9 years ago lloyd.izard ▴ 80
0
votes
1
reply
1.7k
views
flowDensity loop on flowSet
flowdensity flowcore for loop
updated 6.9 years ago by 0 • written 7.1 years ago by • 0
0
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2
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1.5k
views
flowCore: retain raw data in the flowset after transformation
flow cytometry flowcore
updated 6.9 years ago by ★ 1.3k • written 6.9 years ago by • 0
3
votes
3
replies
2.4k
views
Opencyto - detector name not found in flow data, but pretty sure it's there
opencyto flowcore flow cytometry
updated 7.2 years ago by ★ 1.3k • written 8.1 years ago by ▴ 10
1
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2
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1.4k
views
Newbie question: how do I address a subset obtained by split()?
flowStats newbie split subset flowCore
7.3 years ago yulia.chupalova • 0
3
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3
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4.5k
views
Modifying or writing a FCS file in R using the FlowCore package
FCS flowframe flowcore flow cytometry
7.3 years ago vonskopnik ▴ 10
1
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6
replies
1.9k
views
Cannot install flowViz package because dependency flowCore cannot be found, however flowCore has just been installed.
flowViz flowCore package installation
updated 7.3 years ago by 25k • written 7.3 years ago by ▴ 10
0
votes
1
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1.6k
views
How do I apply a singleParameterTransform to a number of parameters in a flowFrame like the standard transforms?
flowcore flow cytometry flowdensity hyperlog transformation
updated 7.3 years ago by ★ 1.3k • written 7.3 years ago by • 0
0
votes
2
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1.2k
views
Loading Flow Files
flowcore list.files
7.3 years ago nicolette.sipperly • 0
0
votes
1
reply
1.2k
views
flowCore parameters( ) function does not appear to exist
flowcore
7.4 years ago neilruthen • 0
1
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3
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6.0k
views
Load FlowCore to read .fcs files in R
flowcore flow cytometry R
7.4 years ago Bayram Sarilmaz • 0
0
votes
2
replies
2.2k
views
Beginner & HowTo-flowCore-Example
flowcore
updated 7.5 years ago by 68k • written 7.5 years ago by • 0
2
votes
5
replies
2.6k
views
How to identify multiple datasets in FCS file through flowCore
flowcore flow cytometry dataset
7.5 years ago vinko.tosevski • 0
2
votes
4
replies
2.0k
views
trouble showing a polygon gate using geom_gate
flowcore ggcyto
updated 7.7 years ago by ★ 1.3k • written 7.7 years ago by ▴ 10
0
votes
3
replies
2.2k
views
Spillover matrix in FlowCore doesn't match Compensation Matrix from FlowJo
spillover flowcore compensation matrix bioconductor flow cytometry
7.8 years ago Samuel Ahuno • 0
2
votes
4
replies
4.2k
views
Exporting FCS from FlowJo for flowCore & cytofkit analysis
flowcore flow cytometry cytofkit
updated 7.8 years ago by ▴ 360 • written 7.8 years ago by ▴ 10
1
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2
replies
1.9k
views
How do you re-order .fcs files in a flowSet?
flowcore flowset bioconductor flow cytometry fcs file
7.8 years ago Samuel Ahuno • 0
0
votes
6
replies
2.9k
views
spillover::flowCore problem: Error in match(unstained, sampleNames(x))
flowcore spillover flowcytometry
updated 7.8 years ago by • 0 • written 9.8 years ago by • 0
0
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1
reply
1.4k
views
spillover::flowCore problem: Error: Unable to match stains with controls based on intensity: a single stain matches to several multiple controls.
flowCore spillover compensation matrix bioconductor flow cytometry
7.8 years ago Samuel Ahuno • 0
0
votes
1
reply
1.5k
views
[flowCore] linearization of logarithmic data seems to be calculated wrong
flowcore flowcytometry
updated 7.9 years ago by ★ 1.3k • written 7.9 years ago by • 0
2
votes
12
replies
16k
views
Error in dimnames(x) <- dn : length of 'dimnames' [1] not equal to array extent
flowcore spillover
updated 8.0 years ago by ★ 1.3k • written 8.0 years ago by ▴ 20
1
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2
replies
1.8k
views
flowCore estimate logicle - error in getChannelMarker
flowcore flow cytometry transformation
updated 8.0 years ago by ▴ 360 • written 8.0 years ago by ▴ 10
0
votes
3
replies
2.0k
views
Loop for mass analyses and extraction of FCS data
Exprs Lapply FCS for loop flowcore
updated 8.1 years ago by ★ 1.3k • written 8.1 years ago by • 0
1
vote
3
replies
2.0k
views
Please help me verify my compensation and spill matrices makes sense ( openCyto package, in flowCore )
flow cytometry flowcore spillover compensation matrix
updated 8.2 years ago by ▴ 360 • written 8.2 years ago by ▴ 20
0
votes
1
reply
1.3k
views
Error executing flowcore vignette
flowcore vignette software error
updated 8.2 years ago by ★ 1.3k • written 8.2 years ago by ▴ 70
1
vote
1
reply
1.5k
views
Using inverse logicle in flowCore
flowCore logicle transformation flow cytometry
updated 8.2 years ago by ★ 1.3k • written 8.2 years ago by ▴ 10
0
votes
2
replies
1.4k
views
Error when reading the fcv file
flowcore
updated 8.2 years ago by ★ 1.3k • written 8.2 years ago by ▴ 20
0
votes
5
replies
2.2k
views
FlowCore/FlowViz: How do I skip plotting of empty populations that would otherwise cause an error?
flowcore flowviz R bioconductor flowstats
updated 8.4 years ago by ▴ 360 • written 8.4 years ago by • 0
0
votes
2
replies
1.9k
views
Subsetting clusters in flowPeaks
flowCore flowViz flowPeaks flowCore flowViz flowPeaks
updated 8.5 years ago by • 0 • written 11.4 years ago by ▴ 30
2
votes
2
replies
1.7k
views
FlowCore: How to write edited flowSet
flowcore
updated 8.5 years ago by ★ 1.3k • written 8.5 years ago by • 0
7
votes
11
replies
17k
views
Error: package or namespace load failed for...
package installation flowviz flowcore rcpp flow cytometry
updated 8.5 years ago by 25k • written 8.5 years ago by ▴ 50
0
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0
replies
1.2k
views
qaProcess.timeline in flowQ won't accept filepath with spaces
flowQ qaProcess.timeline flowcore
8.7 years ago hefin_8 • 0
1
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2
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2.0k
views
flowCore: 'truncate_max_range' argument in 'read.flowSet'
flowcore
8.7 years ago Lukas Weber • 0
0
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2
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1.6k
views
flowCore compilatiopn issue with c++ library conflicting declarations
flowcore c++
8.8 years ago junk.yvert • 0
2
votes
5
replies
2.7k
views
Workflow highthroughputassays can't install properly
workflows flowcore flowstats flowworkspace
8.8 years ago kristoffer.haurum • 0
0
votes
5
replies
1.5k
views
write.flowSet new filenames bug
flowcore write.flowset()
updated 8.8 years ago by ★ 1.3k • written 8.8 years ago by • 0
0
votes
4
replies
2.3k
views
Complex filters in flowCore and ggcyto
flowCore ggcyto
updated 8.8 years ago by ★ 1.3k • written 8.8 years ago by • 0
0
votes
1
reply
2.6k
views
Exporting FCS files from GatingSet
flowcore opencyto gating flowset
updated 8.8 years ago by ★ 1.3k • written 8.8 years ago by • 0
3
votes
0
replies
2.1k
views
An appeal to flow cytometry tools users
flow flowcore flowworkspace cytometry gating
8.9 years ago Greg Finak ▴ 240
0
votes
1
reply
1.5k
views
exporting bi-exponetially transformed data as CVS
flowWorkspace flowcore
updated 8.9 years ago by ★ 1.3k • written 8.9 years ago by ▴ 10
0
votes
0
replies
1.3k
views
Subsetting and Transforming
subsetting gate flowcore
updated 8.9 years ago by 25k • written 8.9 years ago by • 0
2
votes
5
replies
2.2k
views
FlowViz plot gate (node) Names together with statistics
bioconductor flowcore flowviz flowstats
9.0 years ago y.klaver • 0
0
votes
3
replies
2.0k
views
flowCore install issues
flowcore package installation compilation error
9.0 years ago zimon.toutoune • 0
0
votes
6
replies
2.3k
views
Error biexponential transform flowTrans
flowtrans flow cytometry flowcore
updated 9.1 years ago by ★ 1.3k • written 9.1 years ago by • 0
0
votes
10
replies
2.9k
views
Ability to use a particular package via Docker
Docker flowcore dockerfile
9.2 years ago jordan.xanthopoulos • 0
211 results • Page 2 of 5
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Comment: DECIPHER DesignProbes unable to design FISH-probes by Erik Wright ▴ 150
Are the sequences aligned (i.e., the same width) before running `TileSeqs()`?
Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment by Michael Love 43k
BTW, I tested with no issue on MacOS ARM on our previous github issue.
Answer: DESeq(dds, parallel=TRUE) wrong args for environment subassignment by Michael Love 43k
The DESeq2 error makes sense, as we've talked about, given that the simple `bplapply` isn't working in your setup. Maybe give the traceb…
Answer: PTM analysis in LIMPA by Gordon Smyth 53k
For PTM analysis, the usual quantification command dpcQuant() is replaced by dpcImpute(). Otherwise the limpa pipeline is the same as for a…
Answer: problem reading bam files into nucleR by James W. MacDonald 68k
The first step is to update to the current versions of R/Bioconductor and try again. It's possible that you have run into a bug that's alre…
Votes
C: DESeq2 Following RSEM
Upcoming Ensembl API and data access changes - new blog post available
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Large logFC but somewhat high FDR
Comment: upstream git branches of bioc-release
Awards • All
Popular Question to Gordon Smyth 53k
Commentator to sina.nassiri ▴ 130
Popular Question to Hervé Pagès 16k
Popular Question to jared.andrews07 ▴ 30
Popular Question to James W. MacDonald 68k
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