Showing : flowCore • reset
0
votes
1
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158
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Gatins Set error
flowCore Bioconductor
updated 9 weeks ago by 68k • written 9 weeks ago by • 0
0
votes
1
reply
541
views
FCS 32 support going backwards?
flowCore
updated 6 months ago by • 0 • written 6 months ago by • 0
0
votes
0
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350
views
Trouble with double delimiters in .fcs file (flowCore package)
flowCore FlowCytometry FlowCytometryData
11 months ago vpochic • 0
0
votes
0
replies
837
views
How to fix fix $PnR in flowCore
flowCore
updated 18 months ago by 68k • written 18 months ago by • 0
1
vote
1
reply
965
views
FCS3.2 reading
flowWorkspace flowCore CytoML
updated 20 months ago by ▴ 360 • written 21 months ago by ▴ 30
0
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0
replies
804
views
News: Online course - Flow cytometry data analysis with R/Bioconductor
flowDensity flowCore
23 months ago info ▴ 10
0
votes
6
replies
2.1k
views
flowCore >2.0 read.FCS results in $SPILLOVER error when reading certain FCS files (could it be a warning?)
read.FCS flowCore
updated 24 months ago by ▴ 360 • written 24 months ago by • 0
1
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1
reply
829
views
How to read fcs3.2 files
flowCore
updated 2.0 years ago by 68k • written 2.0 years ago by ▴ 10
0
votes
2
replies
919
views
Cannot open Sysmex Partec CUbe 6 .fcs with read.FCS
Partec read.FCS flowCore
2.1 years ago mrescan • 0
0
votes
0
replies
834
views
Best method to manually add a cluster ID to a fcs or csv file
flowCore cytoMEM
2.4 years ago aguirre ▴ 20
0
votes
2
replies
983
views
Unable to access Git links.
Source flowCore Repository git
updated 2.6 years ago by 4.2k • written 2.6 years ago by • 0
0
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0
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810
views
Merging 2 staining panels
FlowCytometry flowCore
2.8 years ago michaela.gregorova13 • 0
0
votes
0
replies
1.2k
views
write.FCS() produces files which cannot be opened by CytExpert software
flowCore
2.8 years ago pawel.malecki • 0
2
votes
1
reply
1.7k
views
How to modify a compensation matrix in an fcs file
flowCore FlowCytometry
3.1 years ago aguirre ▴ 20
0
votes
0
replies
966
views
How to fix Flow-Data autoplot heat map
FlowCytometry flowCore openCyto ggcyto
3.1 years ago Dennis.hinkel • 0
2
votes
9
replies
2.9k
views
Error when plotting flow cytometry data
FlowCytometry flowCore ggcyto
updated 3.2 years ago by ▴ 360 • written 3.2 years ago by • 0
0
votes
0
replies
1.3k
views
Error in the use of flowTrans: L-BFGS-B needs finite values of 'fn'
flowCore FlowCytometryData flowTrans flow
3.7 years ago hamiltond ▴ 10
0
votes
0
replies
1.6k
views
FIXED: Using read.flowSet, getting a "no matching files found" error
flowCore FlowCytometryData
3.7 years ago hamiltond ▴ 10
0
votes
0
replies
1.1k
views
Does flowCore::spillover() produce a spillover matrix or a compensation matrix?
flowCore
3.7 years ago nmchavez • 0
0
votes
0
replies
1.2k
views
flowDensity Unable to find inherited method when given a flowFrame Object
flowCore flowDensity
3.7 years ago nmchavez • 0
0
votes
0
replies
996
views
Reducing/sampling number of FCS events
FlowCytometry flowCore
3.9 years ago markkelly1983 ▴ 20
2
votes
1
reply
1.3k
views
Difference in output of logicle transform in different languages
flowCore
updated 3.7 years ago by • 0 • written 4.0 years ago by ▴ 20
0
votes
0
replies
1.1k
views
Job: Bioconductor developer
FlowCytometry flowCore
4.0 years ago markkelly1983 ▴ 20
0
votes
1
reply
1.0k
views
Error in flowCore::read.FCS(): Error in uint2double(splitted, endian == "big") : vector
read.FCS flowCore
4.1 years ago Rainer • 0
0
votes
1
reply
1.4k
views
Undefined columns error R cytometry analysis
flowCore ggcyto FlowCytometryData
updated 4.2 years ago by ★ 1.3k • written 4.6 years ago by • 0
0
votes
1
reply
2.4k
views
how to get MFI stats from data
flowCore flowStats flowUtils flowWorkspace
updated 4.2 years ago by ★ 1.3k • written 4.6 years ago by • 0
0
votes
1
reply
1.8k
views
Re-naming $PnS parameters
flowCore
updated 4.7 years ago by ▴ 360 • written 4.7 years ago by • 0
2
votes
3
replies
1.6k
views
Getting number of datasets with flowCore
flowCore
updated 4.8 years ago by ▴ 360 • written 4.8 years ago by ▴ 10
1
vote
1
reply
2.2k
views
Error when using read.FCS
compensation flowCore FlowCore read.FCS
updated 4.8 years ago by ▴ 360 • written 4.8 years ago by • 0
0
votes
0
replies
1.0k
views
flowCore - linear transformation
cytofWorkflow cytofworkflow flowCore
5.1 years ago GFM ▴ 20
1
vote
6
replies
2.0k
views
read.flowSet() raises " Argument 'phenoData' must be of type 'AnnotatedDataFrame'" error
flowCore
updated 5.1 years ago by ▴ 360 • written 5.1 years ago by • 0
0
votes
8
replies
2.7k
views
flowset/ncdfFlowset replace keywords doesn't work right
ncdfFlow flowCore
updated 2.2 years ago by • 0 • written 5.2 years ago by ▴ 30
3
votes
10
replies
3.7k
views
Reading multiple data segments from FCS 3.0 file
flowCore flow cytometry FCS 3.0 ncdfFlowSet
updated 3.6 years ago by ▴ 360 • written 5.6 years ago by ▴ 30
0
votes
1
reply
1.2k
views
FlowCore openCyto: problem with summary(result)
flowCore openCyto Summary Result Filter
updated 5.6 years ago by ▴ 310 • written 5.7 years ago by • 0
2
votes
2
replies
2.3k
views
Passing truncate_max_range=FALSE to read.ncdfFlowSet
ncdfFlow flowCore ncdfFlowSet read.FCS
updated 5.6 years ago by ▴ 310 • written 5.6 years ago by ▴ 30
4
votes
5
replies
1.9k
views
Calculate F measure to compare different gating approaches for a specific cell population
flowWorkspace flowCore openCyto flowFrame F-measure
updated 5.7 years ago by ▴ 310 • written 5.7 years ago by • 0
0
votes
0
replies
1.0k
views
Strange problem with parameter range when creating a flowFPModel
flowCore flowFP flowFPModel
5.8 years ago palffy.karoly • 0
0
votes
2
replies
1.5k
views
flowCore not displaying FL gates
flowCore
updated 5.9 years ago by ★ 1.3k • written 5.9 years ago by • 0
2
votes
4
replies
1.8k
views
Mathematical operations in FCS file
flowCore flow cytometry
6.0 years ago chandra.swarnendu • 0
0
votes
1
reply
2.6k
views
Reproducing FlowJo Biexponential Transform in flowCore
flowCore
updated 6.1 years ago by ★ 1.3k • written 6.1 years ago by ▴ 10
1
vote
3
replies
1.8k
views
flowcore:::read.FCS does not read FCS3.1 correctly
flowcore
6.2 years ago cahyasu88 • 0
1
vote
0
replies
1.3k
views
Cell cycle analysis subG1
flowploidy apoptosis cell cycle flowCore
6.3 years ago nina.hahn • 0
3
votes
2
replies
1.5k
views
flowWorkspace cannot load external data
flowWorkspace external data flowCore
6.4 years ago Brent.OCarrigan • 0
1
vote
2
replies
2.8k
views
flowCore issue: creating and applying new compensation matrix
compensate() flowCore
6.4 years ago rdlr • 0
0
votes
1
reply
1.1k
views
Issue creating transformed filter in flowCore
flowCore
updated 6.4 years ago by ▴ 310 • written 6.4 years ago by • 0
4
votes
4
replies
2.0k
views
FCSTransTransform() implementation in flowCore
flowCore FCSTrans flow cytometry
updated 6.5 years ago by ▴ 310 • written 6.5 years ago by ▴ 90
3
votes
1
reply
2.7k
views
Convert Flowframe to matrix
flowcore fcs flow cytommetry matrix conversion
updated 6.5 years ago by ▴ 310 • written 6.5 years ago by • 0
2
votes
3
replies
2.6k
views
how to use the flowCore spillover function
flowCore spillover gatingset2FlowJO
updated 6.5 years ago by ▴ 310 • written 6.5 years ago by • 0
1
vote
4
replies
2.5k
views
flowCore install missing a dependency?
flowCore Installation dependency
updated 6.6 years ago by ▴ 310 • written 6.6 years ago by ▴ 70
0
votes
0
replies
1.2k
views
flowPloidy: how to visualize data on logarythmic x axis
flowPloidy flowcore flow cytometry
6.7 years ago kovacik • 0
211 results • Page 1 of 5
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Comment: DECIPHER DesignProbes unable to design FISH-probes by Erik Wright ▴ 150
Are the sequences aligned (i.e., the same width) before running `TileSeqs()`?
Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment by Michael Love 43k
BTW, I tested with no issue on MacOS ARM on our previous github issue.
Answer: DESeq(dds, parallel=TRUE) wrong args for environment subassignment by Michael Love 43k
The DESeq2 error makes sense, as we've talked about, given that the simple `bplapply` isn't working in your setup. Maybe give the traceb…
Answer: PTM analysis in LIMPA by Gordon Smyth 53k
For PTM analysis, the usual quantification command dpcQuant() is replaced by dpcImpute(). Otherwise the limpa pipeline is the same as for a…
Answer: problem reading bam files into nucleR by James W. MacDonald 68k
The first step is to update to the current versions of R/Bioconductor and try again. It's possible that you have run into a bug that's alre…
Votes
C: DESeq2 Following RSEM
Upcoming Ensembl API and data access changes - new blog post available
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Large logFC but somewhat high FDR
Comment: upstream git branches of bioc-release
Awards • All
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