Showing : getbm • reset
0
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BiomaRt listAttributes - which are external ?
Bioconductor getBM
updated 4 months ago by 67k • written 4 months ago by • 0
0
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0
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249
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Minor allele data from grch38 giving NAs from getBM ?
BioMartGOGeneSets allele_freq biomaRt getBM
5 months ago Abiologist • 0
0
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1
reply
1.3k
views
biomaRt_getBM_Failed to collect lazy table
getBM biomaRt
updated 11 months ago by 67k • written 11 months ago by • 0
0
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3
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2.0k
views
biomaRT getBM() get stuck
biomaRt getbm ensembl
updated 2.8 years ago by ★ 6.6k • written 2.8 years ago by • 0
1
vote
1
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1.9k
views
Error in curl; timeout when using biomaRt
biomaRt curl timeout getBM Bioconductor
updated 3.2 years ago by ★ 1.4k • written 3.2 years ago by • 0
4
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9
replies
4.1k
views
biomaRt - getBM; Error with obtaining a dataset from getBM() function
biomaRt error getBM
updated 3.4 years ago by ★ 6.6k • written 3.7 years ago by ▴ 20
0
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4
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1.8k
views
Question: error in Bioconductor getBM
biomaRt getBM
updated 4.1 years ago by 67k • written 4.1 years ago by • 0
2
votes
2
replies
1.2k
views
How to retrieve attributes from a certain feature page using biomaRt
biomaRt getBM
updated 4.3 years ago by 67k • written 4.3 years ago by • 0
0
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3
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1.1k
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Error in getBM() for Phytozome
biomaRt getBM Phytozome Chlamydomonas
updated 4.6 years ago by ★ 6.6k • written 4.6 years ago by ▴ 10
1
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8
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11k
views
BioMart: curl option when using getBM in loop
curl biomart getBM Tutorial
updated 4.6 years ago by 67k • written 4.6 years ago by ▴ 10
0
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5
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1.9k
views
biomaRt getBM() returns nothing most of the times
biomaRt getBM
updated 4.6 years ago by ★ 1.4k • written 4.6 years ago by • 0
0
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3
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1.0k
views
Hello ! does anybody failed to convert id using getBM in biomaRt package?
biomaRt getBM
updated 5.4 years ago by 67k • written 5.4 years ago by ▴ 20
3
votes
4
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1.6k
views
BioMart : Error in getBM, the BioMart webservice returned an invalid result
BioMart getBM webservice
updated 5.4 years ago by ★ 6.6k • written 5.4 years ago by ▴ 20
1
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3
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1.8k
views
Scan error using biomart getBM with version option and host set
biomart ensembl getbm
5.5 years ago Marc Saric ▴ 70
0
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2
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1.0k
views
Error in biomaRt
biomaRt getBM
updated 5.6 years ago by ★ 6.6k • written 5.6 years ago by • 0
2
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2
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1.7k
views
BiomaRt returns 0 obs
biomart getbm ensembl
updated 6.2 years ago by 67k • written 6.2 years ago by • 0
0
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4
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1.3k
views
retrieve vgnc gene name or vgnc gene symbol from Biomart after differential analysis
biomart mart getbm
updated 6.3 years ago by 67k • written 6.3 years ago by ▴ 20
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2
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1.3k
views
Difference between biomart R and biomart website GO query
biomart ensemblbiomart go getbm
updated 6.6 years ago by ★ 6.6k • written 6.6 years ago by ▴ 20
0
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4
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2.1k
views
biomaRT getBM error
biomart getbm ensembl
updated 6.7 years ago by ★ 6.6k • written 6.7 years ago by • 0
0
votes
2
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1.2k
views
Error retrieving data with biomaRt
biomart r getbm uniprot
6.7 years ago lluex.rova • 0
1
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1
reply
1.3k
views
Ensembl transcripts returned by getBM not matching the biomart website
ensembl transcripts getbm biomart
6.8 years ago hihi.joshi • 0
1
vote
8
replies
2.6k
views
BiomaRt package not working
biomart getbm
7.5 years ago Didi ▴ 10
6
votes
12
replies
6.0k
views
Error in getBM of biomaRt package
biomaRt getBM
updated 7.6 years ago by • 0 • written 7.8 years ago by ▴ 110
3
votes
3
replies
2.1k
views
getBM function, search for annotation characteristics with entrezgene filters --> result with duplicates
getBM entrez gene identifiers duplicate rnaseq
7.8 years ago Jose Luis Soto Vázquez • 0
1
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1
reply
1.3k
views
Agilent BiomaRT getBM unavailable filter value
biomaRT getBM new version
updated 7.9 years ago by 67k • written 7.9 years ago by • 0
1
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0
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1.4k
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biomaRt getBM returns allele as logical instead of character
biomart getBM logical error
8.8 years ago Christian Ruckert ▴ 170
0
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2
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2.1k
views
seemingly erratic responses to different getBM biomaRt requests depending on the attributes requested
getbm biomart
updated 8.9 years ago by ▴ 800 • written 8.9 years ago by ▴ 10
0
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0
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1.2k
views
Missing/inconsistent data with BiomaRt getBM() query
biomart getBM
9.1 years ago yg246 • 0
0
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2
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1.8k
views
How to use gene_flank on getBM()
getBm gene_flank upstream_flank
9.5 years ago • updated 9.4 years ago kris.petrini • 0
0
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0
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1.1k
views
Unclear error in getBM() with attributes and output
getBM software error
9.5 years ago kris.petrini • 0
0
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1
reply
2.1k
views
biomaRt getBM() problem
biomaRt getBM
updated 9.6 years ago by ▴ 800 • written 9.6 years ago by • 0
0
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4
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1.6k
views
[biomaRt] getBM: Error when obtaining mim_morbid_description
biomart getbm error
9.7 years ago Tibor Fulop • 0
32 results • Page 1 of 1
Recent ...
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Answer: Differential Expression Analysis with unbalanced batches without replication bet by Gordon Smyth 51k
> Is there an alternative model or approach in tools like edgeR, limma-voom, or DESeq2 or any other that can handle confounded batch effect…
Comment: BiomaRt Possible Ensembl SSL connectivity problems detected. by Adam • 0
I just found this workaround: httr::set_config(config(ssl_verifypeer = FALSE, ssl_verifyhost = FALSE)) at [this Stack Overflow link][…
Comment: Problem at champ.load by icecreamlover • 0
Hello! Were you able to figure this out? I am running into the same error!
Comment: ChAMP - obtaining beta values using EPICv2 annotation by icecreamlover • 0
Hello, Were you able to fix the error? I used the same document and I am running into the same error. I am curious if you have any feedba…
Comment: BiomaRt Possible Ensembl SSL connectivity problems detected. by Adam • 0
Can this please be revisited and corrected ASAP? I'm encountering the same issue, using a slightly more modern version of R (4.1.0). It s…
Votes
A: Up/Down Regulated GeneList from edgeR and R
A: Up/Down Regulated GeneList from edgeR and R
A: Down/Up-regulated genes asymmetry in edgeR differential expression analysis
Answer: Combining RNAseq and microarray data using edgeR/limma-voom
Answer: How do I merge a list of GRanges?
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