Showing : getbm • reset
1
vote
8
replies
9.2k
views
BioMart: curl option when using getBM in loop
curl biomart getBM Tutorial
updated 4.1 years ago by 65k • written 4.1 years ago by ▴ 10
6
votes
12
replies
5.3k
views
Error in getBM of biomaRt package
biomaRt getBM
updated 7.1 years ago by • 0 • written 7.2 years ago by ▴ 110
4
votes
9
replies
3.7k
views
biomaRt - getBM; Error with obtaining a dataset from getBM() function
biomaRt error getBM
updated 2.9 years ago by ★ 6.5k • written 3.2 years ago by ▴ 20
1
vote
8
replies
2.3k
views
BiomaRt package not working
biomart getbm
7.0 years ago Didi ▴ 10
3
votes
3
replies
2.0k
views
getBM function, search for annotation characteristics with entrezgene filters --> result with duplicates
getBM entrez gene identifiers duplicate rnaseq
7.3 years ago Jose Luis Soto Vázquez • 0
0
votes
1
reply
1.9k
views
biomaRt getBM() problem
biomaRt getBM
updated 9.0 years ago by ▴ 800 • written 9.0 years ago by • 0
0
votes
2
replies
1.9k
views
seemingly erratic responses to different getBM biomaRt requests depending on the attributes requested
getbm biomart
updated 8.4 years ago by ▴ 800 • written 8.4 years ago by ▴ 10
0
votes
4
replies
1.9k
views
biomaRT getBM error
biomart getbm ensembl
updated 6.2 years ago by ★ 6.5k • written 6.2 years ago by • 0
0
votes
4
replies
1.6k
views
Question: error in Bioconductor getBM
biomaRt getBM
updated 3.6 years ago by 65k • written 3.6 years ago by • 0
0
votes
2
replies
1.6k
views
How to use gene_flank on getBM()
getBm gene_flank upstream_flank
8.9 years ago kris.petrini • 0
1
vote
3
replies
1.6k
views
Scan error using biomart getBM with version option and host set
biomart ensembl getbm
5.0 years ago Marc Saric ▴ 70
0
votes
5
replies
1.6k
views
biomaRt getBM() returns nothing most of the times
biomaRt getBM
updated 4.1 years ago by ★ 1.3k • written 4.1 years ago by • 0
1
vote
1
reply
1.5k
views
Error in curl; timeout when using biomaRt
biomaRt curl timeout getBM Bioconductor
updated 2.7 years ago by ★ 1.3k • written 2.7 years ago by • 0
2
votes
2
replies
1.5k
views
BiomaRt returns 0 obs
biomart getbm ensembl
updated 5.7 years ago by 65k • written 5.7 years ago by • 0
0
votes
4
replies
1.5k
views
[biomaRt] getBM: Error when obtaining mim_morbid_description
biomart getbm error
9.2 years ago Tibor Fulop • 0
0
votes
3
replies
1.5k
views
biomaRT getBM() get stuck
biomaRt getbm ensembl
updated 2.3 years ago by ★ 6.5k • written 2.3 years ago by • 0
3
votes
4
replies
1.4k
views
BioMart : Error in getBM, the BioMart webservice returned an invalid result
BioMart getBM webservice
updated 4.9 years ago by ★ 6.5k • written 4.9 years ago by ▴ 20
1
vote
0
replies
1.3k
views
biomaRt getBM returns allele as logical instead of character
biomart getBM logical error
8.3 years ago Christian Ruckert ▴ 170
1
vote
1
reply
1.2k
views
Agilent BiomaRT getBM unavailable filter value
biomaRT getBM new version
updated 7.4 years ago by 65k • written 7.4 years ago by • 0
1
vote
1
reply
1.2k
views
Ensembl transcripts returned by getBM not matching the biomart website
ensembl transcripts getbm biomart
6.3 years ago hihi.joshi • 0
0
votes
4
replies
1.1k
views
retrieve vgnc gene name or vgnc gene symbol from Biomart after differential analysis
biomart mart getbm
updated 5.8 years ago by 65k • written 5.8 years ago by ▴ 20
0
votes
2
replies
1.1k
views
Difference between biomart R and biomart website GO query
biomart ensemblbiomart go getbm
updated 6.0 years ago by ★ 6.5k • written 6.0 years ago by ▴ 20
0
votes
2
replies
1.1k
views
Error retrieving data with biomaRt
biomart r getbm uniprot
6.2 years ago lluex.rova • 0
0
votes
0
replies
1.1k
views
Missing/inconsistent data with BiomaRt getBM() query
biomart getBM
8.6 years ago yg246 • 0
0
votes
0
replies
1.0k
views
Unclear error in getBM() with attributes and output
getBM software error
8.9 years ago kris.petrini • 0
2
votes
2
replies
984
views
How to retrieve attributes from a certain feature page using biomaRt
biomaRt getBM
updated 3.8 years ago by 65k • written 3.8 years ago by • 0
0
votes
3
replies
878
views
Error in getBM() for Phytozome
biomaRt getBM Phytozome Chlamydomonas
updated 4.1 years ago by ★ 6.5k • written 4.1 years ago by ▴ 10
0
votes
2
replies
858
views
Error in biomaRt
biomaRt getBM
updated 5.1 years ago by ★ 6.5k • written 5.1 years ago by • 0
0
votes
3
replies
836
views
Hello ! does anybody failed to convert id using getBM in biomaRt package?
biomaRt getBM
updated 4.9 years ago by 65k • written 4.9 years ago by ▴ 20
0
votes
1
reply
706
views
biomaRt_getBM_Failed to collect lazy table
getBM biomaRt
updated 4 months ago by 65k • written 5 months ago by • 0
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Answer: Once again a "Model matrix not full rank" by swbarnes2 ★ 1.3k
Replicate numbers, like the 1 in control_1 are fine in sample names, but never add them to anything else in colData. From the computer's p…
Answer: limma Intercept vs No-intercept models completely changing DMR results? by Gordon Smyth 50k
I'll add a little bit of general advice to James' answer. You seem to have the misunderstanding that you can change the design matrix but …
Answer: package goseq seems to be not available on the latest version of R by Gordon Smyth 50k
It is true that goseq isn't available for Bioc 3.19. That is because goseq depends on txbmaker, which is itself not yet available for Bioc…
Answer: limma Intercept vs No-intercept models completely changing DMR results? by James W. MacDonald 65k
This part: ``` design_intercept <- model.matrix(~Alt+Sex+Age+PC1, data=targets_Sherpa) colnames(design_intercept) <- c("AltSHP_LA","Al…
Comment: CombineArrays for EPIC and EPIC V2 by Kim • 0
Thank you Tim, this is a great help in getting me started!
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Answer: limma Intercept vs No-intercept models completely changing DMR results?
Answer: CombineArrays for EPIC and EPIC V2
Answer: Too many significant genes when integrating gtex and tcga
Comment: Too many significant genes when integrating gtex and tcga
A: Print Differentially Expressed Exons From Dexseq Results
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