Showing : htqpcr • reset
1
vote
5
replies
587
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Manual creation of qPCRset does not work
bug nondetects HTqPCR
updated 6 months ago by • 0 • written 7 months ago by ▴ 230
0
votes
3
replies
384
views
Technical Replicates in HTqPCR
HTqPCR
written 7 months ago by ▴ 230
0
votes
1
reply
1.2k
views
HTqPCR useful for ChIP data ?
Preprocessing Clustering HTqPCR Preprocessing Clustering HTqPCR
updated 18 months ago by • 0 • written 12.3 years ago by ▴ 10
0
votes
0
replies
606
views
How to perform a cluster analysis in RT-qPCR or HT-qPCR results?
cluster qpcr qpcrNorm clusterProfiler HTqPCR
18 months ago Javier • 0
3
votes
4
replies
3.0k
views
Using limma for the analysis of qPCR data
NormqPCR EasyqpcR qPCR HTqPCR limma
updated 2.5 years ago by ▴ 380 • written 3.3 years ago by ▴ 660
0
votes
0
replies
555
views
Made a pDATA manually for HTqPCR procedure
HTqPCR phenoData esetVis pData
2.5 years ago Marcelo Laia ▴ 450
0
votes
0
replies
508
views
Error when reading qPCR data in SDS format
HTqPCR
3.1 years ago Nghia • 0
1
vote
1
reply
1.3k
views
HTQPCR - create qPCR set from a matrix of CT values
HTqPCR
updated 3.3 years ago by 50k • written 8.4 years ago by ▴ 40
0
votes
1
reply
856
views
HTqPCR: dealing with technical replicates (filterCategory) and inability to analyze datasets with filtered genes (limmaCtData).
limma htqpcr
updated 3.3 years ago by • 0 • written 5.3 years ago by • 0
0
votes
0
replies
515
views
Problems creating qPCRset from RT2 array data with HTqPCR package
HTqPCR
3.8 years ago Maximilian Fuchs • 0
0
votes
0
replies
474
views
HTqPCR package, filterCategory function
HTqPCR filterCategory setCategory
updated 4.3 years ago by 65k • written 4.3 years ago by • 0
0
votes
0
replies
724
views
Sample grouping (phenoData) and visualization in R package- HtqPCR
HtqPCR grouping visualization R phenoData
4.7 years ago mohammedtoufiq91 ▴ 10
0
votes
0
replies
613
views
Analyze ct data using HTqPCR
HTqPCR R NormqPCR
4.8 years ago annesha • 0
0
votes
0
replies
505
views
Error with HTqPCR rbind
HTqPCR
4.9 years ago NAIARA GARCÍA ▴ 10
0
votes
0
replies
627
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A problem about changeCtLayout in HTqPCR
htqpcr
5.3 years ago tropicalis • 0
0
votes
3
replies
967
views
Creation of qPCRset in R for HtqPCR
R bioconductor htqpcr qpcrset object
5.6 years ago mohammedtoufiq91 ▴ 10
0
votes
0
replies
730
views
Creating qPCRset object from Bio-Rad CFX file
htqpcr limma
5.6 years ago dbars • 0
0
votes
0
replies
856
views
HTqPCR - unable to create a 'qPCRset' object
htqpcr expressionset
5.8 years ago jirkanov • 0
0
votes
0
replies
785
views
Inter-run calibration in HTqPCR R package
htqpcr R
5.9 years ago dbarscortina • 0
0
votes
0
replies
912
views
Import problem with HTqPCR Fluidigm 96.96
htqpcr bioconductor fluidigm biomark
6.2 years ago reed27 • 0
0
votes
0
replies
816
views
HTqPCR for Fluidigm Results
htqpcr fluidigm
6.2 years ago rhonce • 0
0
votes
0
replies
818
views
HTqPCR trouble with changeCtLayout
htqpcr qPCR
6.2 years ago samantha_jeschonek • 0
2
votes
2
replies
1.0k
views
Reading in delta Ct values using HTqPCR
htqpcr
updated 6.2 years ago by 50k • written 6.2 years ago by ▴ 10
0
votes
0
replies
719
views
Bugs in HTqPCR 1.30.0?
htqpcr
6.4 years ago h.roest • 0
1
vote
2
replies
1.3k
views
No differential expression with limmaCtData possible
limma htqpcr
6.5 years ago • updated 6.4 years ago h.roest • 0
0
votes
0
replies
741
views
HTqPCR package: problems with the limmaCtData function
htqpcr
6.8 years ago Frederico Moraes Ferreira ▴ 100
0
votes
1
reply
992
views
Problem duplicated samples for ChangeCtLayout in HTqPCR with fluidigm 96*96
htqpcr
7.0 years ago carine.genet • 0
0
votes
0
replies
843
views
re-format data for HtqPCR
HtqPCR reshape
7.2 years ago Stefany Solano • 0
0
votes
1
reply
1.1k
views
HTqPCR cannot read more recent SDS files
htqpcr
updated 7.2 years ago by • 0 • written 7.3 years ago by ▴ 40
0
votes
3
replies
1.2k
views
HTqPCR does not copy featureData when subsetting a qPCRset
htqpcr
updated 7.2 years ago by • 0 • written 7.3 years ago by ▴ 40
0
votes
0
replies
872
views
Batch Correction in HTqPCR?
qPCR htqpcr
7.2 years ago bradley • 0
3
votes
1
reply
1.4k
views
Errors with HTqPCR v1.28.0 and BioC 3.4
HTqPCR
updated 7.3 years ago by ▴ 40 • written 7.5 years ago by ▴ 20
0
votes
1
reply
1.2k
views
HTqPCR: bug in subsetting qPCRset
HTqPCR htqpcr subsetting
updated 7.3 years ago by ▴ 40 • written 7.5 years ago by ★ 3.9k
3
votes
7
replies
2.1k
views
Subsetting qPCRset loses sample names, possibly due to change of assayDataElementReplace
HTqPCR
7.3 years ago henrik.seidel ▴ 40
0
votes
0
replies
812
views
HTqPCR - Multiple plates for multiple samples
htqpcr
7.6 years ago Angela LR • 0
0
votes
0
replies
932
views
HTqPCR limma decide test issue?
limma decide test HTqPCR
7.6 years ago polemiraza ▴ 70
0
votes
1
reply
1.4k
views
Possible bug in setCategory function from HTqPCR package
htqpcr HTqPCR
updated 7.6 years ago by • 0 • written 9.4 years ago by ▴ 830
0
votes
0
replies
741
views
setCategory flag and flag.pout argument problems
htqpcr
7.6 years ago h.roest • 0
0
votes
0
replies
1.0k
views
Combining TLDA cards for normalization
normalization microrna htqpcr
7.8 years ago jamie_jabalee • 0
1
vote
0
replies
2.0k
views
HTqPCR readCtData 12 samples x 63 genes - error: row names supplied are of the wrong length
HTqPCR readCtData Heidi Dvinge
8.0 years ago virginia.claudio ▴ 10
0
votes
0
replies
1.1k
views
Error in readCtData
htqpcr readctdata connection readlines
8.0 years ago lizhensor • 0
0
votes
0
replies
928
views
Help with loading Data and reading Ct values
htqpcr
8.2 years ago Pheebz • 0
0
votes
0
replies
941
views
error in reading files using HTqPCR
htqpcr
10.5 years ago • updated 8.3 years ago Alex ▴ 10
0
votes
1
reply
1.2k
views
featureNames converted to numbers in limmaCtData
limma htqpcr
8.7 years ago julio.c.silver • 0
1
vote
7
replies
1.7k
views
limmaCTData Error requires ndups=2 even when there are no duplicate genes (should be ndups=1)
limma ndups htqpcr software error
updated 8.7 years ago by 50k • written 8.7 years ago by • 0
0
votes
0
replies
1.5k
views
Problems importing (new) LightCycler data to HTqPCR
htqpcr dataimport
9.0 years ago H.H. • 0
0
votes
2
replies
1.2k
views
HTqPCR + setting flags as unreliable problem
htqpcr flags setCategory
9.4 years ago samantha.smith-4 • 0
0
votes
0
replies
1.0k
views
Bugs in HTqPCR implementation of data normalization
Normalization HTqPCR Normalization HTqPCR
9.8 years ago Peter Langfelder ★ 3.0k
0
votes
0
replies
2.1k
views
reading qRT-PCR data
ddCt HTqPCR ReadqPCR ddCt HTqPCR ReadqPCR
10.0 years ago Guest User ★ 13k
0
votes
5
replies
1.5k
views
Reading in mutiple files using readCtData
HTqPCR HTqPCR
updated 10.2 years ago by 65k • written 10.2 years ago by ▴ 50
50 results • Page 1 of 1
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Comment: putting my own expression data in deseq2 by ATpoint ★ 4.1k
> directly from GEOquery I can tell you that GEOquery retrieves array data not appropriate for DESeq2. For anything else make your questi…
Comment: Assist me in determining whether the analysis process using the limma package ha by SSSJec • 0
Thanks for your reply. I understand the principle of adjusted P-values, but I still want to address that issue. The description of the G…
Comment: Why p value inconsistent when using different number of pathway score? by Gordon Smyth 50k
Just a note that fgsea is not classical GSEA. The classical GSEA as described in the Subramanian paper and other papers from the Broad Inst…
Comment: Perform gene set enrichment analysis using fgsea on two conditions that don't ha by Chris • 0
Thank you! The resource I use may mispresent the requirement input of fgsea.
Answer: Perform gene set enrichment analysis using fgsea on two conditions that don't ha by alserg ▴ 260
fgsea doesn't require the presence of deferentially expressed genes, it takes as the input the differential expression-based ranking of all…
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Nominations for Bioconductor Awards 2024!
Answer: Improving the design matrices vignette in RNAseq123
Answer: Perform gene set enrichment analysis using fgsea on two conditions that don't ha
Answer: Perform gene set enrichment analysis using fgsea on two conditions that don't ha
Comment: DESeq2: Contrast for two conditions combined versus one condition (A+B_vs_C)
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