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reset
2
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2
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3.4k
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Problem with HDF5 and ncdfFlow
installation
dependency
library
hdf5
8.6 years ago
Ulrik Stervbo
▴ 30
0
votes
1
reply
1.1k
views
Couldnt find getAE and ae2bioc?
getAE
ae2bioc
bioconductor
packages
library
updated 4.6 years ago by
Mike Smith
★ 6.5k • written 4.6 years ago by
kodherif
• 0
0
votes
4
replies
2.8k
views
Normalization by variance stabilizing transformation VST
library
composition
vst
DESeq2
Normalization
2.4 years ago
kristoffersandas
• 0
3
votes
3
replies
1.5k
views
Using a single R installation with multiple BioConductor library installations - opinions & best practices sought
version
release
library
updated 9.1 years ago by
Hotz, Hans-Rudolf
▴ 400 • written 9.1 years ago by
Malcolm Cook
★ 1.6k
1
vote
2
replies
2.7k
views
Corrupt Database Error When Loading qvalue() Package
qvalue
library
software error
package installation
package updates
7.4 years ago
tah340
• 0
1
vote
2
replies
4.8k
views
ICU init failed: U_FILE_ACCESS_ERROR while loading library "VariantAnnotation"
variantannotation
library
error
updated 8.7 years ago by
Valerie Obenchain
★ 6.8k • written 8.7 years ago by
kmu004
▴ 50
3
votes
2
replies
2.5k
views
Rqc - envir must be either NULL, a list, or an environment.
software error
bug
library
updated 7.2 years ago by
Welliton de Souza
▴ 70 • written 7.3 years ago by
guus.steeg
▴ 10
0
votes
1
reply
2.6k
views
R Session Aborted; R ecountered a fatal error while loading openCyto
opencyto
fatal error
library
updated 6.8 years ago by
Jiang, Mike
★ 1.3k • written 6.8 years ago by
Maria
• 0
3
votes
3
replies
1.5k
views
Fail to load "MotifDb" package
MotifDb
library
load
updated 7.1 years ago by
Paul Shannon
▴ 470 • written 7.1 years ago by
Pengcheng Yang
▴ 60
0
votes
1
reply
1.3k
views
ALL Library and ALL Data Set error
bioconductor
R
library
software error
ALL library
7.3 years ago
alyssa.ylescu
• 0
1
vote
1
reply
3.0k
views
[Windows 10] 64. Problem installing biocLite due Warning on non writable directory
installation
windows10
not-writable
warning message
library
8.4 years ago
juancaf
• 0
0
votes
1
reply
1.4k
views
Loading library with name in a variable
library
characters
9.4 years ago
Patrick Schorderet
▴ 20
3
votes
5
replies
1.1k
views
why is downloading the .tar.gz file for a given bioconductor package, then installing with R CMD INSTALL so much more effective than BiocManager::ins…
Bioconductor
Install
library
biocmanager
updated 9 months ago by
Vincent J. Carey, Jr.
6.7k • written 9 months ago by
Ndimensional
▴ 20
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Comment: Math expression in shapeCustom legend in EnhancedVolcano
by
pl23
• 0
Thank you very much - that worked perfectly! Word of warning to those who try this: it screws up the other legends because of the markdown …
Answer: PCA plot suggestions
by
Michael Love
41k
For help with interpretation and design of analysis, I recommend working with a local statistician. Due to time restrictions, I can only…
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
by
ussarizona
▴ 10
Hi Michael, Yes, I could figure it out what does the error mean. In my matrix I had the first colum GeneID while in my condition I only h…
Answer: Deseq2. decontXcounts not integers. Useful alternative?
by
Michael Love
41k
Another option would be to put the per sample estimated contamination in the design. This is for example how RUV etc help remove spurious D…
Answer: ATACseq merge peaks
by
ATpoint
★ 4.0k
That depends on your analysis. Typically, for differential analysis (and convenience) you would produce a single set of peaks (e.g. by merg…
Votes
Answer: Math expression in shapeCustom legend in EnhancedVolcano
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
Comment: Deseq2. decontXcounts not integers. Useful alternative?
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
biomaRt error: database disk image is malformed
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