Showing : log2 • reset
6
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Does limma calculate pvalues using log2 fold changes or with linear values?
limma pvalue log2fc log2
updated 17 months ago by 65k • written 8.1 years ago by ▴ 60
2
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4
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3.0k
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exporting limma log2 data
limma export log2 data agilent
updated 9.5 years ago by 65k • written 9.5 years ago by ▴ 110
0
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8
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2.6k
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DESeq2 different log2FC and p-value filtering parameters results comparison
log2 DESeq2
21 months ago User000 • 0
0
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1
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2.0k
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How to plot the RMA log2 normalised data from Affymetrix
log2 RMA Affymetrix affy Normalization
updated 3.2 years ago by ★ 3.9k • written 3.2 years ago by • 0
3
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6
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1.9k
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Limma: log2 of TMM values for RNA-Seq Analysis and PlotMDS()?
Log2 edgeR RNA limma Normalization
17 months ago Sara • 0
3
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1
reply
1.4k
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log2 of normalized counts for further analyzes
DESeq2 log2 normalized counts
updated 14 months ago by 65k • written 14 months ago by ▴ 10
0
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0
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1.4k
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DESeq2: Extract mean normalized log2 counts by level
normalized counts log2
5.6 years ago agdif ▴ 10
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0
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930
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PROBLEM WITH MFUZZ
mfuzz fold change log2 STANDARDISATION
5.8 years ago prakashpandey1111 • 0
0
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1
reply
887
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First time Statistical Analysis of RNA-seq
edgeR RNA-Seq log2 foldchange q_value
updated 2.3 years ago by 50k • written 2.3 years ago by • 0
0
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0
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784
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NMF pre-processsing effect on classification
NMF log2 classification bioconductor
5.9 years ago Seymoo • 0
10 results • Page 1 of 1
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Comment: Why p value inconsistent when using different number of pathway score? by Chris • 0
Hi Robert, if two conditions don't have hundreds of differential express genes ( in some conditions such as peripheral blood Alzheimer vs n…
Answer: Dominance Index for Shotgun Metagenomics Data by Leo Lahti ▴ 40
1. Note that Simpson's dominance index (\lambda) is a different index than inverse Simpson (1/\lambda) or reciprocal Simpson (1-\lambda). T…
Comment: Math expression in shapeCustom legend in EnhancedVolcano by pl23 • 0
Thank you very much - that worked perfectly! Word of warning to those who try this: it screws up the other legends because of the markdown …
Answer: PCA plot suggestions by Michael Love 41k
For help with interpretation and design of analysis, I recommend working with a local statistician. Due to time restrictions, I can only…
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length by ussarizona ▴ 10
Hi Michael, Yes, I could figure it out what does the error mean. In my matrix I had the first colum GeneID while in my condition I only h…
Votes
Answer: Dominance Index for Shotgun Metagenomics Data
Answer: Math expression in shapeCustom legend in EnhancedVolcano
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
Comment: Deseq2. decontXcounts not integers. Useful alternative?
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
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