Showing : log2 • reset
6
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8
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5.0k
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Does limma calculate pvalues using log2 fold changes or with linear values?
limma pvalue log2fc log2
updated 10 months ago by 63k • written 7.5 years ago by ▴ 60
3
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6
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1.2k
views
Limma: log2 of TMM values for RNA-Seq Analysis and PlotMDS()?
Log2 edgeR RNA limma Normalization
10 months ago Sara • 0
3
votes
1
reply
710
views
log2 of normalized counts for further analyzes
DESeq2 log2 normalized counts
updated 7 months ago by 63k • written 7 months ago by ▴ 10
2
votes
4
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2.8k
views
exporting limma log2 data
limma export log2 data agilent
updated 9.0 years ago by 63k • written 9.0 years ago by ▴ 110
0
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0
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1.2k
views
DESeq2: Extract mean normalized log2 counts by level
normalized counts log2
5.0 years ago agdif ▴ 10
0
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1
reply
1.4k
views
How to plot the RMA log2 normalised data from Affymetrix
log2 RMA Affymetrix affy Normalization
updated 2.6 years ago by 3.8k • written 2.6 years ago by • 0
0
votes
1
reply
691
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First time Statistical Analysis of RNA-seq
edgeR RNA-Seq log2 foldchange q_value
updated 20 months ago by 48k • written 20 months ago by • 0
0
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8
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1.8k
views
DESeq2 different log2FC and p-value filtering parameters results comparison
log2 DESeq2
14 months ago User000 • 0
0
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0
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712
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PROBLEM WITH MFUZZ
mfuzz fold change log2 STANDARDISATION
5.3 years ago prakashpandey1111 • 0
0
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0
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632
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NMF pre-processsing effect on classification
NMF log2 classification bioconductor
5.3 years ago Seymoo • 0
10 results • Page 1 of 1
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Answer: Is SeqSQC compatible with hg38? by James W. MacDonald 63k
I'll answer your question with a question. Is there any reason to believe that things like IBD or PCA or Sex checks would be dependent on t…
Comment: using featureCounts (Subread) to count only spliced reads per gene - behavior of by Gregory • 0
Thanks for the prompt response, Gordon. I'm looking for count at the gene level - the gene id is the meta feature, so one row per gene in …
Comment: DiffBind handling of replicates and consensus by Rory Stark ★ 5.0k
You may want to try different values for the `normalize` parameter: dbObj <- dba.normalize(DBA = dbObj, library = "RiP", normalize=DBA…
Comment: DiffBind: dba.plotProfile(profiles) by Rory Stark ★ 5.0k
Yes, setting `raster_quality` down is a good way to address this issue. I've taken to using `raster_quality=1` in general as I think the pl…
Comment: DiffBind: dba.plotProfile(profiles) by Dorien ▴ 10
Not really an answer as I don't know really know why , but I also had the same issue and may have found a workaround ! If I set maxSites > …
Votes
Answer: How do I merge a list of GRanges?
Comment: biomaRt code/getBM function no longer importing 'coding' sequence via seqType ar
Comment: DiffBind: dba.plotProfile(profiles)
Answer: DiffBind - how to prep the sample matrix when multiple bam files are used by MAC
Comment: DiffBind: dba.plotProfile(profiles)
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