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Answer: ATACseq merge peaks
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ATpoint
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That depends on your analysis. Typically, for differential analysis (and convenience) you would produce a single set of peaks (e.g. by merg…
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camp
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Yes, @atpoint is correct. decontX decontaminated counts are not integers due to the way the variation inference algorithm works, but you ca…
Comment: Deseq2. decontXcounts not integers. Useful alternative?
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I do not know this decontamination tool you use but generally:
If these counts are basically "corrected" raw counts in the sense that they'…
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Thanks to Shian Su, we have confirmed that the problem in the design matrices vignette html is caused by a bug in knitr 1.44 (to do with sp…
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Thank you for your comment!
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