Showing : matrix • reset
3
votes
8
replies
2.6k
views
S4Vectors masks/breaks regular Matrix functions
S4Vectors Matrix
7.3 years ago peter.kharchenko ▴ 30
4
votes
8
replies
1.3k
views
problem in designing matrix and batch effect
edger rna-seq matrix
updated 4.4 years ago by 65k • written 4.4 years ago by • 0
3
votes
7
replies
1.4k
views
small dimensions in the matrix of counts from smallRNA using DESEq2
matrix DESeq2 SmallRNA dimensions small
2.7 years ago andreia ▴ 10
3
votes
7
replies
3.2k
views
Handle missing values in the z-score matrix while plotting heatmap in the ComplexHeatmap
matrix heatmap ComplexHeatmap missing values R
updated 4.7 years ago by ▴ 260 • written 4.7 years ago by ▴ 10
0
votes
7
replies
2.3k
views
Deseq2 no package Matrix found
deseq2 bioconductor matrix
6.6 years ago victoria.carla.moris • 0
10
votes
7
replies
2.5k
views
SummarizedExperiment object from GEOquery obtained GSE
geoquery summarizedexperiment GEO matrix
updated 6.4 years ago by 21k • written 6.4 years ago by ▴ 60
1
vote
7
replies
6.8k
views
scater runUMAP fails with error "function 'as_cholmod_sparse' not provided by package 'Matrix'"
runUMAP scater Matrix
updated 10 weeks ago by 16k • written 6 months ago by ▴ 10
0
votes
5
replies
1.3k
views
DESeq2 design formula - correlation with ordered variable
DESeq2 design formula matrix
updated 6.0 years ago by 42k • written 6.0 years ago by ▴ 170
0
votes
4
replies
1.7k
views
reading in data and transform it to matrix format
matrix text
8.8 years ago Angel ▴ 40
3
votes
4
replies
1.3k
views
Paired analysis (tumor vs normal) at three different conditions with EdgeR
edger design matrix de
updated 5.2 years ago by ★ 28k • written 5.2 years ago by ▴ 10
2
votes
4
replies
1.1k
views
Are there any functions to subtract all features(rows) to a particular value(row) in the same data file?
R python normalization matrix
updated 4.7 years ago by ▴ 30 • written 4.7 years ago by ▴ 10
2
votes
3
replies
1.4k
views
Filtering counts in SummarizedExperiment
diffbind matrix summarizedexperiment rangedCounts
updated 4.6 years ago by ★ 5.2k • written 4.6 years ago by ▴ 60
2
votes
3
replies
1.2k
views
Differential expression error in edgeR - maybe from design matrix?
design edgeR matrix RNA-seq MDplot
updated 3.0 years ago by 50k • written 3.0 years ago by • 0
1
vote
3
replies
2.4k
views
[DiffBind] Memory issues with dba.count()
diffbind bigmemory matrix dba.count
updated 8.7 years ago by ★ 5.2k • written 8.7 years ago by ▴ 660
1
vote
2
replies
891
views
How to construct matrix and fit linear model for this microarray?
microarray dge matrix makecontrasts limma
updated 3.8 years ago by 50k • written 3.8 years ago by ▴ 10
1
vote
2
replies
952
views
want the piece of the matrix I wanted
matrix
updated 5.9 years ago by ★ 1.0k • written 5.9 years ago by ▴ 20
3
votes
2
replies
1.9k
views
DEXSeq throws a warning - rank-deficient matrix
dexseq fit matrix warning
updated 2.5 years ago by • 0 • written 7.3 years ago by ★ 1.5k
1
vote
2
replies
1.3k
views
sva :: sva can variable of interest be a matrix itself?
sva variable of ineterest matrix
updated 7.5 years ago by ▴ 650 • written 7.5 years ago by • 0
3
votes
2
replies
795
views
Scoring a seq based on a matrix
matrix
updated 6.0 years ago by 25k • written 6.0 years ago by • 0
1
vote
2
replies
985
views
Which factors to include in design matrix and how to do it in a challenging experimental design
RNAseq Design Matrix
2.5 years ago Barista • 0
0
votes
1
reply
867
views
[General] compare matrix to vector higher/lower
matrix
updated 8.6 years ago by ▴ 370 • written 8.6 years ago by • 0
3
votes
1
reply
2.0k
views
Convert Flowframe to matrix
flowcore fcs flow cytommetry matrix conversion
updated 4.9 years ago by ▴ 310 • written 4.9 years ago by • 0
22 results • Page 1 of 1
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Comment: Ensembl plants at annotationHub? by Daniele • 0
Dear Johannes, Would it be possible to create the EnsDb for Triticum aestivum (IWGSC)? Thank you very much, Daniele
Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools by BioinfGuru ▴ 30
Figured it out with ?eigencorplot, thanks Michael. I was trying to pass 10 PCs when I only had 8, and I was including metadata columns that…
Answer: DECIPHER::idTaxa - broken link to download GTDB r220 (modified) trainig set by makala • 0
Thanks a lot!
Comment: DECIPHER::idTaxa - broken link to download GTDB r220 (modified) trainig set by Erik Wright ▴ 150
Thanks for notifying us of this broken link. It should be fixed on the Downloads page now. [1] [1]: http://www2.decipher.codes/Classificat…
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa by Matthew Thornton ▴ 360
So it turns out that if the count and the size are the same in 'GOstats", the odds ratio is 'inf'. These are causing the issue. Thank you!!
Votes
Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Rsubread counting peaks ATACseq
Comment: Can DESeq2 rlog normalized matrix reflects time course result directly?
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