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methyanalysis
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0
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755
views
Diffrential Gene expression in a group of specific methylated prometor patience
GeneExpression
methyAnalysis
MethylationArray
4.1 years ago
coobzie
• 0
1
vote
2
replies
1.6k
views
Methylation data visualization using methyAnalysis with minfi
methylation
microarray
illumina
minfi
methyanalysis
updated 6.0 years ago by
Ou, Jianhong
★ 1.3k • written 6.0 years ago by
Adam_M
• 0
0
votes
0
replies
853
views
methyAnalysis - library(methyAnalysis) hangs when talking to Internet
methyanalysis
6.9 years ago
mcahn
• 0
2
votes
4
replies
3.0k
views
Problem in installing Bioconductor packages due to "IRanges"
lumi
methylumi
methyAnalysis
7.0 years ago
topijush
▴ 10
0
votes
0
replies
973
views
Recurring error in smoothMethygenoset step for MethyAnalysis
methyanalysis
7.1 years ago
charleneee95
• 0
1
vote
9
replies
4.2k
views
strange results from differential methylation analysis using limma
limma
methylation
methyanalysis
IMA
updated 2.6 years ago by
Sean Davis
21k • written 7.8 years ago by
RC
• 0
0
votes
0
replies
1.2k
views
methyAnalysis: heatmapByChromosome not works
methyAnalysis
8.2 years ago
Shicheng Guo
• 0
0
votes
1
reply
1.1k
views
problem with identifySigDMR command
methyAnalysis
8.4 years ago
yuping.zhang
• 0
0
votes
0
replies
1.8k
views
methyAnalysis error with example data
methyanalysis
8.6 years ago
Tom
▴ 10
4
votes
10
replies
4.9k
views
Illumina MethylationEPIC vs. 450K
methylumi
minfi
illuminahumanmethylation450k.db
450k
methyanalysis
updated 8.8 years ago by
Peter Hickey
▴ 740 • written 8.8 years ago by
Ahdee
▴ 50
1
vote
13
replies
2.5k
views
MethylAid package visualize function not opening a web browser
illimina 450k methylation
methyanalysis
methylaid
9.2 years ago
jdangelo
• 0
0
votes
1
reply
4.5k
views
methyAnalysis M values and Beta Values
methyAnalysis
methyanalysis
450k
updated 9.8 years ago by
Pan Du
▴ 80 • written 9.8 years ago by
andrew.j.skelton73
▴ 370
1
vote
5
replies
1.6k
views
Understanding methyAnalysis Results
methyAnalysis
methyanalysis
methylation
illuminahumanmethylation450k.db
updated 9.8 years ago by
Pan Du
▴ 80 • written 9.8 years ago by
andrew.j.skelton73
▴ 370
0
votes
0
replies
1.9k
views
DMR identification: minfi speed, memory problems
Annotation
convert
minfi
methyAnalysis
bumphunter
Annotation
convert
minfi
methyAnalysis
10.8 years ago
Allegra Petti
▴ 120
0
votes
8
replies
2.5k
views
methyAnalysis for DMR identification
convert
methyAnalysis
convert
methyAnalysis
updated 10.8 years ago by
Giovanni Calice
▴ 160 • written 10.8 years ago by
Guest User
★ 13k
0
votes
6
replies
3.3k
views
DMR identification: minfi speed, memory problems
Annotation
convert
minfi
methyAnalysis
bumphunter
Annotation
convert
minfi
methyAnalysis
updated 10.8 years ago by
James W. MacDonald
67k • written 10.8 years ago by
Guest User
★ 13k
0
votes
0
replies
1.9k
views
Conversion of minfi format MethylSet to methyAnalysis format MethyGenoSet
Cancer
charm
minfi
methyAnalysis
Cancer
charm
minfi
methyAnalysis
11.8 years ago
Ed Schwalbe
▴ 20
0
votes
2
replies
1.4k
views
genoset:::initGenoSet
methyAnalysis
methyAnalysis
updated 11.8 years ago by
Pan Du
▴ 440 • written 11.8 years ago by
Schalkwyk, Leonard
▴ 20
0
votes
2
replies
1.9k
views
Loading Data into MethyAnalysis
Microarray
methyAnalysis
Microarray
methyAnalysis
updated 11.9 years ago by
Pan Du
▴ 440 • written 11.9 years ago by
Guest User
★ 13k
0
votes
1
reply
1.2k
views
methyAnalysis methyGenoSet function
methyAnalysis
methyAnalysis
updated 11.9 years ago by
Sean Davis
21k • written 11.9 years ago by
Giancarlo
▴ 10
0
votes
0
replies
1.3k
views
importing data problem with methyAnalysis package
Biophysics
Annotation
Preprocessing
annotate
lumi
methyAnalysis
Biophysics
Annotation
lumi
12.0 years ago
Pan Du
▴ 440
21 results • Page
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Comment: Cross-validation with multiple control subgroups in limma
by
Ali Barry
▴ 40
Thanks so much for taking the time here, the insights are much appreciated. I suspected I'd have to ad hoc compare results if I did repeat …
Answer: Cross-validation with multiple control subgroups in limma
by
Gordon Smyth
52k
limma doesn't do cross-validation or resampling. Like most classical linear modeling procedures in statistics, limma uses a statistical mod…
Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio
by
Robert Castelo
★ 3.4k
Hi Hervé, thank you very much for your input into how to properly build and manage TxDb objects. gDNAx has two main inputs, one or more BAM…
Comment: Biostrings: Error writing long reads (>200 kbps) with writeQualityScaledXStringS
by
Aidan
▴ 60
Quick update: this is fixed in a branch awaiting PR to Biostrings (https://github.com/Bioconductor/Biostrings/pull/122). Should be in `deve…
Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings?
by
Michael Love
43k
For statistical analysis plans, I recommend working with a local statistician or someone familiar with linear models in R. I have to reserv…
Votes
Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings?
Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio
C: edgeR and lack of counts ID on CPM matrix
A: DESeq2 Following RSEM
A: importing RSEM data into DESeq2
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