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methyanalysis
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776
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Diffrential Gene expression in a group of specific methylated prometor patience
GeneExpression
methyAnalysis
MethylationArray
4.3 years ago
coobzie
• 0
1
vote
2
replies
1.7k
views
Methylation data visualization using methyAnalysis with minfi
methylation
microarray
illumina
minfi
methyanalysis
updated 6.2 years ago by
Ou, Jianhong
★ 1.3k • written 6.2 years ago by
Adam_M
• 0
0
votes
0
replies
878
views
methyAnalysis - library(methyAnalysis) hangs when talking to Internet
methyanalysis
7.0 years ago
mcahn
• 0
2
votes
4
replies
3.1k
views
Problem in installing Bioconductor packages due to "IRanges"
lumi
methylumi
methyAnalysis
7.1 years ago
topijush
▴ 10
0
votes
0
replies
1.0k
views
Recurring error in smoothMethygenoset step for MethyAnalysis
methyanalysis
7.2 years ago
charleneee95
• 0
1
vote
9
replies
4.3k
views
strange results from differential methylation analysis using limma
limma
methylation
methyanalysis
IMA
updated 2.8 years ago by
Sean Davis
21k • written 7.9 years ago by
RC
• 0
0
votes
0
replies
1.2k
views
methyAnalysis: heatmapByChromosome not works
methyAnalysis
8.4 years ago
Shicheng Guo
• 0
0
votes
1
reply
1.1k
views
problem with identifySigDMR command
methyAnalysis
8.6 years ago • updated 8.5 years ago
yuping.zhang
• 0
0
votes
0
replies
1.8k
views
methyAnalysis error with example data
methyanalysis
8.7 years ago
Tom
▴ 10
4
votes
10
replies
5.0k
views
Illumina MethylationEPIC vs. 450K
methylumi
minfi
illuminahumanmethylation450k.db
450k
methyanalysis
updated 9.0 years ago by
Peter Hickey
▴ 750 • written 9.0 years ago by
Ahdee
▴ 50
1
vote
13
replies
2.6k
views
MethylAid package visualize function not opening a web browser
illimina 450k methylation
methyanalysis
methylaid
9.4 years ago
jdangelo
• 0
0
votes
1
reply
4.6k
views
methyAnalysis M values and Beta Values
methyAnalysis
methyanalysis
450k
updated 10.0 years ago by
Pan Du
▴ 80 • written 10.0 years ago by
andrew.j.skelton73
▴ 370
1
vote
5
replies
1.6k
views
Understanding methyAnalysis Results
methyAnalysis
methyanalysis
methylation
illuminahumanmethylation450k.db
updated 10.0 years ago by
Pan Du
▴ 80 • written 10.0 years ago by
andrew.j.skelton73
▴ 370
0
votes
0
replies
1.9k
views
DMR identification: minfi speed, memory problems
Annotation
convert
minfi
methyAnalysis
bumphunter
Annotation
convert
minfi
methyAnalysis
11.0 years ago
Allegra Petti
▴ 120
0
votes
8
replies
2.6k
views
methyAnalysis for DMR identification
convert
methyAnalysis
convert
methyAnalysis
updated 11.0 years ago by
Giovanni Calice
▴ 160 • written 11.0 years ago by
Guest User
★ 13k
0
votes
6
replies
3.4k
views
DMR identification: minfi speed, memory problems
Annotation
convert
minfi
methyAnalysis
bumphunter
Annotation
convert
minfi
methyAnalysis
updated 11.0 years ago by
James W. MacDonald
68k • written 11.0 years ago by
Guest User
★ 13k
0
votes
0
replies
1.9k
views
Conversion of minfi format MethylSet to methyAnalysis format MethyGenoSet
Cancer
charm
minfi
methyAnalysis
Cancer
charm
minfi
methyAnalysis
12.0 years ago
Ed Schwalbe
▴ 20
0
votes
2
replies
1.4k
views
genoset:::initGenoSet
methyAnalysis
methyAnalysis
updated 12.0 years ago by
Pan Du
▴ 440 • written 12.0 years ago by
Schalkwyk, Leonard
▴ 20
0
votes
2
replies
1.9k
views
Loading Data into MethyAnalysis
Microarray
methyAnalysis
Microarray
methyAnalysis
updated 12.1 years ago by
Pan Du
▴ 440 • written 12.1 years ago by
Guest User
★ 13k
0
votes
1
reply
1.3k
views
methyAnalysis methyGenoSet function
methyAnalysis
methyAnalysis
updated 12.1 years ago by
Sean Davis
21k • written 12.1 years ago by
Giancarlo
▴ 10
0
votes
0
replies
1.3k
views
importing data problem with methyAnalysis package
Biophysics
Annotation
Preprocessing
annotate
lumi
methyAnalysis
Biophysics
Annotation
lumi
12.1 years ago
Pan Du
▴ 440
21 results • Page
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Replies
Answer: SingleR with multiple single cell references
by
Aaron Lun
★ 28k
> Is it necessary to piece together the individual steps manually (e.g. aggregateReference, trainSingleR, classifySingleR, combineRecompute…
Answer: Automatically install dependencies
by
ATpoint
★ 4.7k
The BiocManager, which is sort of an extended wrapper around `install.packages`, installs all R dependencies. If you see errors then this i…
Answer: To count or not to count multi-overlapping reads?
by
Gordon Smyth
52k
> How does it handle reads that map to a gene that is located in a region that also has another gene but on the alternate strand? Overlapp…
Comment: Weird p-values using DESeq2?
by
ATpoint
★ 4.7k
This does not look like normalized counts but raw counts. Consider using `counts(dds, normalized = TRUE)` or the output of `normTransform()…
Answer: Weird p-values using DESeq2?
by
Wolfgang Huber
★ 13k
Dear Ingrid, thank you for asking. Can you provide the input count matrix (you can "pseudonymize" the biological conditions and the gene n…
Votes
A: Fraction count for multi mapping reads; how to generate input file for Deseq2 fo
Comment: Weird p-values using DESeq2?
Comment: Overcoming confounding in batch effect correction
Answer: Store Matrix in DataFrame Cell
Answer: enrichGOgradient color change
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