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methyanalysis
•
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0
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0
replies
730
views
Diffrential Gene expression in a group of specific methylated prometor patience
GeneExpression
methyAnalysis
MethylationArray
4.0 years ago
coobzie
• 0
1
vote
2
replies
1.6k
views
Methylation data visualization using methyAnalysis with minfi
methylation
microarray
illumina
minfi
methyanalysis
updated 5.9 years ago by
Ou, Jianhong
★ 1.3k • written 5.9 years ago by
Adam_M
• 0
0
votes
0
replies
836
views
methyAnalysis - library(methyAnalysis) hangs when talking to Internet
methyanalysis
6.8 years ago
mcahn
• 0
2
votes
4
replies
2.9k
views
Problem in installing Bioconductor packages due to "IRanges"
lumi
methylumi
methyAnalysis
6.8 years ago
topijush
▴ 10
0
votes
0
replies
950
views
Recurring error in smoothMethygenoset step for MethyAnalysis
methyanalysis
7.0 years ago
charleneee95
• 0
1
vote
9
replies
4.1k
views
strange results from differential methylation analysis using limma
limma
methylation
methyanalysis
IMA
updated 2.5 years ago by
Sean Davis
21k • written 7.7 years ago by
RC
• 0
0
votes
0
replies
1.2k
views
methyAnalysis: heatmapByChromosome not works
methyAnalysis
8.1 years ago
Shicheng Guo
• 0
0
votes
1
reply
1.1k
views
problem with identifySigDMR command
methyAnalysis
8.3 years ago
yuping.zhang
• 0
0
votes
0
replies
1.8k
views
methyAnalysis error with example data
methyanalysis
8.5 years ago
Tom
▴ 10
4
votes
10
replies
4.8k
views
Illumina MethylationEPIC vs. 450K
methylumi
minfi
illuminahumanmethylation450k.db
450k
methyanalysis
updated 8.7 years ago by
Peter Hickey
▴ 740 • written 8.7 years ago by
Ahdee
▴ 50
1
vote
13
replies
2.5k
views
MethylAid package visualize function not opening a web browser
illimina 450k methylation
methyanalysis
methylaid
9.1 years ago
jdangelo
• 0
0
votes
1
reply
4.5k
views
methyAnalysis M values and Beta Values
methyAnalysis
methyanalysis
450k
updated 9.7 years ago by
Pan Du
▴ 80 • written 9.7 years ago by
andrew.j.skelton73
▴ 370
1
vote
5
replies
1.5k
views
Understanding methyAnalysis Results
methyAnalysis
methyanalysis
methylation
illuminahumanmethylation450k.db
updated 9.7 years ago by
Pan Du
▴ 80 • written 9.7 years ago by
andrew.j.skelton73
▴ 370
0
votes
0
replies
1.8k
views
DMR identification: minfi speed, memory problems
Annotation
convert
minfi
methyAnalysis
bumphunter
Annotation
convert
minfi
methyAnalysis
10.7 years ago
Allegra Petti
▴ 120
0
votes
8
replies
2.5k
views
methyAnalysis for DMR identification
convert
methyAnalysis
convert
methyAnalysis
updated 10.7 years ago by
Giovanni Calice
▴ 160 • written 10.7 years ago by
Guest User
★ 13k
0
votes
6
replies
3.2k
views
DMR identification: minfi speed, memory problems
Annotation
convert
minfi
methyAnalysis
bumphunter
Annotation
convert
minfi
methyAnalysis
updated 10.7 years ago by
James W. MacDonald
67k • written 10.7 years ago by
Guest User
★ 13k
0
votes
0
replies
1.8k
views
Conversion of minfi format MethylSet to methyAnalysis format MethyGenoSet
Cancer
charm
minfi
methyAnalysis
Cancer
charm
minfi
methyAnalysis
11.7 years ago
Ed Schwalbe
▴ 20
0
votes
2
replies
1.4k
views
genoset:::initGenoSet
methyAnalysis
methyAnalysis
updated 11.7 years ago by
Pan Du
▴ 440 • written 11.7 years ago by
Schalkwyk, Leonard
▴ 20
0
votes
2
replies
1.9k
views
Loading Data into MethyAnalysis
Microarray
methyAnalysis
Microarray
methyAnalysis
updated 11.8 years ago by
Pan Du
▴ 440 • written 11.8 years ago by
Guest User
★ 13k
0
votes
1
reply
1.2k
views
methyAnalysis methyGenoSet function
methyAnalysis
methyAnalysis
updated 11.8 years ago by
Sean Davis
21k • written 11.8 years ago by
Giancarlo
▴ 10
0
votes
0
replies
1.3k
views
importing data problem with methyAnalysis package
Biophysics
Annotation
Preprocessing
annotate
lumi
methyAnalysis
Biophysics
Annotation
lumi
11.8 years ago
Pan Du
▴ 440
21 results • Page
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Comment: Combining RNAseq and microarray data using edgeR/limma-voom
by
Adam Marstrand
• 0
Thank you!
Comment: Combining RNAseq and microarray data using edgeR/limma-voom
by
Adam Marstrand
• 0
Hi Gordon, Thanks for the answer! This makes a lot of sense. Your suggested pipeline (separate processing of datasets -> gene set analyses…
Comment: How many of my genes from my gene list are in each KEGG pathway?
by
josephasmith1310
• 0
> You can compare the number in the column setSize versus the number of > genes in core_enrichment. The former corresponds to the number of…
Comment: EuroBioC2024 abstract submission is open!
by
Esperan
• 0
Great information about the EuroBioC2024 conference! https://openreview.net/group?id=bioconductor.org/EuroBioC/2024/Conferences [slope](htt…
Answer: Combining RNAseq and microarray data using edgeR/limma-voom
by
Gordon Smyth
51k
I agree with James, although I tend to combine analyses using geneset tests rather than by meta analysis tools like GeneMeta. > My questio…
Votes
Answer: Combining RNAseq and microarray data using edgeR/limma-voom
Answer: How do I merge a list of GRanges?
A: p.adjust BH generates duplicate values
Answer: Adjusted p-values become NA when sub-setting samples
Comment: Suggestion for FGSEA and GSEA creation for C57BL/6J Mice
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