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missmethyl
•
reset
0
votes
2
replies
585
views
ageData (minfi pipeline)
ageData
missMethyl
differentialvariability
minfi
updated 7 weeks ago by
CHEN
• 0 • written 12 months ago by
Saanchi
• 0
0
votes
1
reply
283
views
Error in GOmeth function of missMethyl when EPICv2 annotation is used
DNAMethylation
GO
MethylationArray
missMethyl
EPICv2
updated 10 weeks ago by
belinda.phipson
▴ 40 • written 10 weeks ago by
s.malik
• 0
0
votes
1
reply
501
views
dmrcate needs at least two non-NA values to interpolate
miss
DMRcate
missMethyl
updated 9 months ago by
Tim Peters
▴ 180 • written 9 months ago by
b.curran
• 0
1
vote
1
reply
576
views
urgent error for producing table of topGO() annotated DMPs methylation
methylationArrayAnalysis
topGO
missMethyl
MethylationArrayData
MethylationArray
updated 12 months ago by
belinda.phipson
▴ 40 • written 12 months ago by
Grace
• 0
0
votes
1
reply
515
views
topGO() analysis of DMPs in missMethyl methylation analysis
DNAMethylation
missMethyl
Pathways
12 months ago
Grace
• 0
0
votes
0
replies
377
views
goMeth
missMethyl
14 months ago
anmolanp
▴ 10
2
votes
6
replies
983
views
No enriched GO terms CpGs
DNAMethylation
missMethyl
updated 14 months ago by
belinda.phipson
▴ 40 • written 14 months ago by
Joana
• 0
2
votes
3
replies
955
views
GSEA for paired methylation data
missMethyl
GSEA
minfi
methylGSA
updated 16 months ago by
belinda.phipson
▴ 40 • written 16 months ago by
Lukas
• 0
0
votes
6
replies
1.3k
views
Find genes in pathways enrichment
dmrcate
enrichment analysis
epic array
goregion
missmethyl
updated 2.8 years ago by
Jovana Maksimovic
▴ 10 • written 3.8 years ago by
yoursbassanio
▴ 10
0
votes
1
reply
828
views
missMethyl - get names of differentially methylated genes from gometh()
missMethyl
updated 2.8 years ago by
Jovana Maksimovic
▴ 10 • written 3.7 years ago by
stewart999
▴ 10
1
vote
2
replies
2.0k
views
Minfi read.metharray.sheet error
minfi
methylation
dataimport
minfidata
missmethyl
updated 5.7 years ago by
James W. MacDonald
65k • written 5.7 years ago by
moldach
▴ 20
0
votes
0
replies
919
views
missMethyl EPIC manifest update
missmethyl
epic
illuminahumanmethylationepicanno.ilm10b4.hg19.
ruv
5.7 years ago
peter.fransquet
• 0
0
votes
0
replies
856
views
missmethyl gsameth outputs matrix instead of dataframe
missmethyl
gsameth
5.9 years ago
owen.whitley
▴ 10
0
votes
1
reply
1.3k
views
Test for differential variability with missMethyl (DiffVar) using block design
missmethyl
diffvar
design matrix
limma
block
updated 6.0 years ago by
lhuang7
▴ 50 • written 6.9 years ago by
Simone
▴ 190
0
votes
0
replies
905
views
which value from ruvadj in missMethyl can present methylation status
methylation
missmethyl
RUV
batch effect
6.0 years ago
RC
• 0
0
votes
0
replies
917
views
MissMethyl: Sample size and control probes
missmethyl
RUV
control probes
6.0 years ago
Taub, Margaret
▴ 10
0
votes
2
replies
1.4k
views
prior.prob has opposite effects in goana and kegga?
limma
missMethyl
gometh
goana
kegga
updated 6.8 years ago by
Gordon Smyth
50k • written 7.0 years ago by
Jenny Drnevich
★ 2.0k
0
votes
3
replies
1.3k
views
Details of gene names in DE
missmethyl
updated 7.1 years ago by
James W. MacDonald
65k • written 7.1 years ago by
r.clifford
• 0
0
votes
1
reply
1.2k
views
missMethyl package: gsameth bias plots
missmethyl
plots
bias
package
updated 7.2 years ago by
belinda.phipson
▴ 40 • written 7.2 years ago by
evani.radiya.dixit
• 0
1
vote
2
replies
1.4k
views
Gene Ontology Overrepresentation Analysis with a custom level of Abstraction of GO Terminology
gene ontology
GO
overrepresentation analysis
missmethyl
gostats
updated 7.8 years ago by
James W. MacDonald
65k • written 7.8 years ago by
graggsd
• 0
1
vote
3
replies
3.0k
views
Pathway analysis of differentially methylated CpGs
limma
missmethyl
8.1 years ago
philipp24
▴ 30
3
votes
3
replies
3.5k
views
missMethyl: Gene ontology analysis
missMethyl
8.2 years ago • updated 8.1 years ago
philipp24
▴ 30
0
votes
0
replies
1.2k
views
Pathway analysis of differentially methylated CpGs
limma
missmethyl
8.1 years ago
philipp24
▴ 30
23 results • Page
1 of 1
Recent ...
Replies
Comment: Numerical differences in DESeq2 output depending on different design matrix cons
by
JKim
• 0
The 1st model has an interaction term, but the 2nd model doesn't have the interaction term. That makes the difference.
Comment: Ensembl plants at annotationHub?
by
Daniele
• 0
Hi, I'm using Ensembl Plants release 59 with the IWGSC RefSeq v1.1 gene annotation. Thanks a lot for replying so quickly!
Comment: Numerical differences in DESeq2 output depending on different design matrix cons
by
swbarnes2
★ 1.4k
If you restrict yourself to, say, genes with a baseMean > 50, are the numerical differences between the two designs significant?
Comment: DESeq2- Mysterious interaction suppresses DEGs
by
shaunpeterson
• 0
The images I tried to attach didn't attach. Here is the PCA (MDS) of all the samples, with the Cortex outlier highlighed. ![enter image de…
Comment: STRINGdb : error with string_db$plot_network()
by
damian.szk
▴ 80
ok. Forcing non-secure protocol should not be needed anymore, due to changes in the underlying library. However, I will look at why "HTTP" …
Votes
Answer: Error while installing BiocManager::install("org.Vdahliae.eg.db")
Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Rsubread counting peaks ATACseq
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