Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
msnbase
•
reset
4
votes
15
replies
3.1k
views
Converting Synapter object output into a MSnbase-compatible object
synapter
msnbase
8.8 years ago • updated 8.6 years ago
diana.schreier
• 0
0
votes
14
replies
2.5k
views
Pbase: AddIdentificationData. How can I use MSnId objects (filtered psm) to build the Proteins database
pbase
MsnId
mzid
msnbase
updated 8.2 years ago by
Sebastian Gibb
▴ 80 • written 8.2 years ago by
viswanathan.raghuram
• 0
1
vote
9
replies
2.5k
views
msnbase error when adding identification data
msnbase
proteomics
itraq
updated 9.3 years ago by
Laurent Gatto
1.6k • written 9.3 years ago by
queso012
• 0
0
votes
8
replies
3.3k
views
Getting data into (and out of) the MSnSet object
proteomics
MSnbase
MSnSet
readMSnSet
msmsTests
updated 4.7 years ago by
sutturka
• 0 • written 6.3 years ago by
moldach
▴ 20
8
votes
7
replies
2.1k
views
readMSData and netCDF files, how to set polarity ?
MSnbase
updated 4.0 years ago by
Johannes Rainer
★ 2.0k • written 4.0 years ago by
julien.kermorvant
▴ 30
0
votes
7
replies
3.5k
views
LFQ shiny app from DEP package reports: Error: 'imputeMethods' is not an exported object from 'namespace:MSnbase'
MSnbase
MsCoreUtils
DEP
updated 21 months ago by
Malcolm Cook
★ 1.6k • written 2.2 years ago by
Tobias
▴ 40
0
votes
6
replies
1.8k
views
Protein quantification by MSnbase package
msnbase
rforproteomics
5.2 years ago
fgol
▴ 10
0
votes
6
replies
2.0k
views
Combining two MSnSet
msnbase
6.6 years ago • updated 6.3 years ago
kamal.fartiyal84
▴ 10
0
votes
5
replies
3.8k
views
Errors installing RforProteomics and MSnbase packages
RforProteomics
MSnbase
updated 5.3 years ago by
Laurent Gatto
1.6k • written 5.3 years ago by
fgol
▴ 10
0
votes
5
replies
1.2k
views
MSnbase addIdentificationData problem
software error
MSnbase
updated 4.9 years ago by
Laurent Gatto
1.6k • written 4.9 years ago by
jd690764
• 0
4
votes
5
replies
2.0k
views
How to convert a xlsx data file to MSnSet format?
msnbase
msmstests
proteomics
lc-ms/ms
msnID
updated 5.2 years ago by
Laurent Gatto
1.6k • written 5.3 years ago by
fgol
▴ 10
0
votes
5
replies
1.9k
views
MSnbase package, Error in downloading data file "PXD000001" from PRIDE Repository by pxget function
MSnbase
Bioconductor
PRIDE
rpx
PXDataset
updated 24 months ago by
Laurent Gatto
1.6k • written 5.3 years ago by
fgol
▴ 10
0
votes
5
replies
1.3k
views
runInfo returns startTimeStamp -infinity
lcms
mzR
metabolomics
xcms
MSnbase
updated 4.7 years ago by
Laurent Gatto
1.6k • written 4.7 years ago by
pol.soladelossantos
• 0
4
votes
4
replies
1.2k
views
Extracting Data from MSn experiment data ("OnDiskMSnExp")
MSnbase
updated 4.8 years ago by
Laurent Gatto
1.6k • written 4.8 years ago by
jamesrgraham
▴ 20
0
votes
4
replies
2.0k
views
Missing value imputation
msnbase
6.8 years ago
kamal.fartiyal84
▴ 10
2
votes
4
replies
1.4k
views
calling combineFeatures twice causes duplicate row.names
msnbase
duplicate
rforproteomics
updated 6.3 years ago by
Laurent Gatto
1.6k • written 6.3 years ago by
joris.vanhoutven
▴ 10
0
votes
4
replies
1.5k
views
Error with xcms - requiring MSnbase 2.15.3 but not installing
software error
xcms
MSnbase
updated 3.7 years ago by
Laurent Gatto
1.6k • written 3.7 years ago by
kramerl
• 0
3
votes
4
replies
932
views
Ion Mass to Charge Search R Function with MSnbase, Data frame as mass to charge input help
MSnbase
plyr
updated 4.3 years ago by
Laurent Gatto
1.6k • written 4.3 years ago by
djshipman2011
▴ 10
0
votes
4
replies
2.8k
views
Error when loading MSnbase package "object 'vI' not found"
msnbase
xcms
pheatmap
5.1 years ago
lmg
• 0
0
votes
4
replies
1.1k
views
MSnset combine error message
MSnbase
5.3 years ago
kamal.fartiyal84
▴ 10
0
votes
3
replies
1.0k
views
TMT 10 plex impurity corrections
MSnbase
updated 2.1 years ago by
Laurent Gatto
1.6k • written 2.1 years ago by
Akul Mehta
• 0
2
votes
3
replies
881
views
MSnbase extracting individual spectrum based on precursor ion m/z
MSnbase
updated 4.9 years ago by
Laurent Gatto
1.6k • written 4.9 years ago by
garfield320
▴ 30
3
votes
2
replies
911
views
Access list of rtime/intensity values from chromatograms object from MSnbase
MSnbase
chromatograms
intensity
updated 4.8 years ago by
Laurent Gatto
1.6k • written 4.8 years ago by
djshipman2011
▴ 10
3
votes
2
replies
1.2k
views
MSnbase annotate m/z values on mass spectrum plots
msnbase
updated 5.4 years ago by
Laurent Gatto
1.6k • written 5.4 years ago by
garfield320
▴ 30
1
vote
2
replies
954
views
quantify() method for MSnExp to MSnSet for MS1 level data only
msnbase
spectrum
updated 5.7 years ago by
Laurent Gatto
1.6k • written 5.7 years ago by
dgemoets
• 0
1
vote
2
replies
1.4k
views
Label free quantification post FDR calculation for MS/MS Proteomics
mzid
msnbase
mzr
updated 6.0 years ago by
Laurent Gatto
1.6k • written 6.0 years ago by
jspmccain
▴ 10
3
votes
2
replies
775
views
readMSData and netCDF files, only TIC intensity available
MSnbase
netCDF
3.9 years ago
julien.kermorvant
▴ 30
0
votes
2
replies
1.1k
views
How to manipulate assayData in MSnSetList
msnbase
6.1 years ago
kamal.fartiyal84
▴ 10
0
votes
2
replies
1.0k
views
Error loading package MSnbase on MacOS
MSnbase
updated 18 months ago by
Laurent Gatto
1.6k • written 18 months ago by
Vinicius
• 0
0
votes
2
replies
4.5k
views
Error: package or namespace load failed for ‘MSnbase’
MSnbase
updated 8.2 years ago by
Laurent Gatto
1.6k • written 8.2 years ago by
Marie
• 0
1
vote
1
reply
849
views
Missing SCANS in writeMgfData
MSnbase
updated 3.5 years ago by
Laurent Gatto
1.6k • written 3.5 years ago by
Pedro Baldoni
▴ 40
2
votes
1
reply
962
views
Maximum parsimony protein assembly/inference
rforproteomics
proteomics
msnid
msnbase
4.1 years ago
daniel.magnus.bader
▴ 50
0
votes
1
reply
929
views
Adding Identification Data to MSnbase MSn Experiment
MSnbase
6.6 years ago
lau1
• 0
0
votes
1
reply
734
views
Problem in ion intensity
MSnbase
updated 2.4 years ago by
Laurent Gatto
1.6k • written 2.4 years ago by
imartins
• 0
0
votes
1
reply
864
views
possible problem with mzR? cannot load Msnset for proteomics analysis
MSnbase
mzR
Bioconductor
limma
updated 3.2 years ago by
Laurent Gatto
1.6k • written 3.2 years ago by
yaare
• 0
0
votes
1
reply
1.5k
views
Installation problem
MSnbase
updated 2.4 years ago by
Laurent Gatto
1.6k • written 2.4 years ago by
Qing
• 0
3
votes
1
reply
959
views
Does OnDiskMSnExp rewrite original data
xcms
msnbase
ondiskmsnexp
updated 5.7 years ago by
Laurent Gatto
1.6k • written 5.7 years ago by
goh
• 0
0
votes
0
replies
659
views
Which package I can use?
MSnbase
DAPAR
DEP
3.5 years ago
yueli7
▴ 20
0
votes
0
replies
408
views
Problem with "too large halfWindowSize" with writeMSdata after centroiding MSe data
MSnbase
15 months ago
christine.wegler
• 0
0
votes
0
replies
170
views
News:
Online course: Mass Spectrometry and Proteomics with R/Bioconductor
MSnbase
10 weeks ago
info
▴ 10
40 results • Page
1 of 1
Recent ...
Replies
Comment: error running enricher from clusterprofiler
by
Yael
• 0
It worked!!! Thanks alot, i think something in the gene_list wasnt right... Thanks agian
Comment: Create protein sequences including variants from a VCF file
by
Yun
• 0
This cannot work for a SNV file, since `injectSNPs` need a `SNPlocs` object
Comment: Can log2cpm be used for proteomics data normalization?
by
Daniel
• 0
Thank you for the quick reply and I apologize for it being on the wrong thread but the "post tag" function wasn't working properly.
Comment: Error while installing BiocManager::install("org.Vdahliae.eg.db")
by
Patadù
▴ 10
I have arranged the code again following the other post and also the script you suggested. Now, I managed to install `org.Vdahliae.eg.db`. …
Comment: Error while installing BiocManager::install("org.Vdahliae.eg.db")
by
Patadù
▴ 10
Thanks again Guido, I will try to run the script you have suggested and see if I can install the package. Yes, I have seen this message a…
Votes
Answer: Trim/Filter out-of-bounds GRanges
Comment: How to correctly adjust for gender in edgeR
Create protein sequences including variants from a VCF file
A: DEXSeq design formula
Answer: SGSeq: moving toward diffex from SGSeq analysis
Awards
• All
Popular Question
to
Vincent J. Carey, Jr.
6.7k
Popular Question
to
boczniak767
▴ 720
Popular Question
to
jmoon1194
• 0
Popular Question
to
mat.lesche
▴ 90
Popular Question
to
jordi.planells
• 0
Locations
• All
France,
10 minutes ago
United States,
20 minutes ago
Israel,
25 minutes ago
United States,
25 minutes ago
United States,
26 minutes ago
Traffic: 926 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6