Showing : pathview • reset
0
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4
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3.1k
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Drawing custom KEGG pathways
pathview KEGG
written 4.3 years ago by ▴ 10
0
votes
1
reply
365
views
Pathview visualisation not including positive log2 fold changes
pathview Proteomics
updated 6 months ago by 68k • written 6 months ago by • 0
0
votes
2
replies
763
views
How to visualize these pathways using pathview
Salmo_salar RNASeq KEGG pathview
7 months ago • updated 6 months ago ingrid.h • 0
1
vote
4
replies
764
views
pathview - multiple states
pathview Pathways KEGG
9 months ago Philippine • 0
0
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0
replies
432
views
GAGE results interpretation with gene-foldchange as input for cases of all-negative foldchange
GO KEGG gage pathview
15 months ago danalvoronov ▴ 10
0
votes
1
reply
652
views
Help with identifying genes mapped to KEGG pathway using pathview
pathview
updated 17 months ago by ★ 4.1k • written 17 months ago by • 0
0
votes
4
replies
3.6k
views
pathview error "negative length vectors are not allowed
pathview kegg KEGG
updated 10 months ago by • 0 • written 23 months ago by • 0
0
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0
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1.2k
views
SSL connect error in e.g. pathview from R version 4 in Windows 10
pathview SSL curl
2.1 years ago Matthias • 0
1
vote
4
replies
2.1k
views
pathview - a species in KEGG pathway but not in 'korg'
pathview KEGG Oryza_sativa
2.2 years ago Jiyoung Lee • 0
1
vote
1
reply
3.1k
views
Error with Pathview: Bad Request (HTTP 400)
KEGGREST pathview R
updated 2.4 years ago by ★ 4.1k • written 2.4 years ago by ▴ 10
0
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2
replies
2.3k
views
pathview: Warning: Failed to download KEGG xml/png files, hsa04110 skipped!
pathview
2.4 years ago 덕윤 • 0
4
votes
3
replies
4.0k
views
only 0's may be mixed with negative subscripts
pathview
updated 2.5 years ago by ▴ 10 • written 8.7 years ago by ▴ 30
1
vote
3
replies
1.9k
views
Many NAs using TAIR IDs for plotting KEGG pathways using pathview
KEGG TAIR_IDs KEGGdzPathwaysGEO pathview
updated 2.7 years ago by 68k • written 2.8 years ago by • 0
4
votes
6
replies
5.5k
views
Pathview unable to download pathways
clusterProfiler KEGGgraph clusterpr KEGG pathview
updated 3.0 years ago by ★ 4.1k • written 3.2 years ago by ▴ 10
3
votes
13
replies
3.9k
views
pathview says my nonmodel species is unknown: "species invalid"
KEGGREST KEGG gage pathview
3.0 years ago • updated 2.6 years ago nute11a ▴ 10
0
votes
1
reply
1.3k
views
Pathview error Warning: Parsing ./mmu04928.xml file failed, please check the file!
KEGGgraph pathview
updated 3.2 years ago by ★ 4.1k • written 3.2 years ago by • 0
0
votes
1
reply
1.8k
views
Help with Pathview: No annotation package for a species, gene symbols not mapped!
annotation_package not_available_in_BioConductor pathview
updated 2.9 years ago by • 0 • written 3.5 years ago by • 0
2
votes
2
replies
1.4k
views
pathview returns incorrect mappings for yeast
org.Sc.sgd.db org.Sc pathview
3.6 years ago chase.mateusiak • 0
0
votes
3
replies
1.7k
views
pathview: unable to use option "out.suffix"
pathview
updated 4.2 years ago by ★ 1.6k • written 4.2 years ago by • 0
1
vote
2
replies
1.2k
views
Pathview won't render some KEGG pathways
pathview
4.3 years ago Duncan • 0
1
vote
2
replies
2.4k
views
PATHVIEW incorrect values being plotted in output
pathview org.Hs.eg.db
4.4 years ago • updated 4.3 years ago Rodrigo • 0
44
votes
29
replies
14k
views
.onLoad failed in loadNamespace() for 'org.Hs.eg.db'
org.Hs.eg.db pathview
updated 4.4 years ago by ▴ 130 • written 4.4 years ago by ▴ 160
0
votes
1
reply
1.3k
views
News: SBGNview manuscript on bioRxiv now
pathway SBGNview Reactome pathview PANTHER
written 4.4 years ago by ★ 1.6k
0
votes
0
replies
1.5k
views
Job: Biostatistics/Bioinformatics Research Scientist at UNC Charlotte
singlecellRNA-Seq pathview statistics R
4.4 years ago • updated 4.3 years ago Luo Weijun ★ 1.6k
6
votes
5
replies
2.2k
views
KEGG analysis for plasmodium
KEGG gage gageData pathview
updated 4.5 years ago by ★ 1.6k • written 4.5 years ago by • 0
1
vote
1
reply
1.6k
views
News: SBGNview: Data Analysis, Integration and Visualization on 5000+ Pathways/3000+ Species
SBGNview pathways SBGNview.data pathview visualization
4.5 years ago Luo Weijun ★ 1.6k
1
vote
2
replies
1.6k
views
Can I create a gene set using GAGE?
gage pathview gageData
written 4.6 years ago by ▴ 40
0
votes
1
reply
1.3k
views
Change colors pathview
pathview
updated 4.7 years ago by ★ 1.6k • written 4.7 years ago by ▴ 30
0
votes
0
replies
1.2k
views
Job: Biostatistics/Bioinformatics Research Scientist at UNC Charlotte
R statistics pathview singlecellRNA-Seq
4.8 years ago • updated 4.4 years ago Luo Weijun ★ 1.6k
0
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0
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1.6k
views
Pathview: empty metabolic map
pathview
4.9 years ago landenshanie ▴ 40
0
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2
replies
1.8k
views
Hightlight genes/metabolites in Pathview and ReactomePA
pathview ReactomePA
updated 5.2 years ago by 68k • written 5.2 years ago by • 0
0
votes
0
replies
891
views
Pathview colors only matching ids?
pathview
5.2 years ago okna0215 ▴ 10
1
vote
0
replies
1.3k
views
Pathview : why are some genes not colored?
pathview rna-seq
5.2 years ago okna0215 ▴ 10
0
votes
1
reply
1.1k
views
Argument map.symbol converting IDs even when its value is FALSE
pathview
updated 5.3 years ago by ★ 4.0k • written 6.5 years ago by • 0
0
votes
1
reply
1.1k
views
Multiple samples in pathview with different colors
pathview multiple samples
updated 4.2 years ago by • 0 • written 5.6 years ago by • 0
0
votes
0
replies
1.2k
views
gage function problem in R
gage R kegg pathview
updated 5.6 years ago by 43k • written 5.6 years ago by • 0
4
votes
4
replies
2.7k
views
How I interpret this plot from pathview
pathview kegg r pathway
5.8 years ago AZ ▴ 30
0
votes
0
replies
1.4k
views
KEGG pathway analysis using gage/pathview non KEGG organism duplicate K IDs
gage pathview KEGG Gene enrichment analysis
5.9 years ago MimR • 0
0
votes
3
replies
1.8k
views
None of the genes or compounds mapped to the pathway!
pathview AnnotationDbi
updated 5.9 years ago by 43k • written 5.9 years ago by • 0
0
votes
0
replies
1.3k
views
Modifying a Pathview function which needs an internet connection so that it can work without an internet connection.
Pathview Gene Mapping KEGG
6.0 years ago omarrafiqued ▴ 50
0
votes
0
replies
959
views
pathview : kegg gene ID in the visualisation ?
pathview
6.1 years ago cedric.vmdl • 0
0
votes
2
replies
1.6k
views
Issue with xml files downloaded with `pathview()`
pathview kegg xml
updated 6.1 years ago by ★ 1.6k • written 6.1 years ago by ▴ 10
0
votes
2
replies
2.5k
views
pathview: object 'bods' not found
pathview
updated 6.1 years ago by ▴ 10 • written 7.0 years ago by • 0
0
votes
1
reply
1.1k
views
Pathview won't colour even with matching IDs
pathview
6.5 years ago francesco.gualdrini • 0
0
votes
0
replies
1.1k
views
Help with mapping Kegg hsa01100 using pathview
kegg pathway pathview
6.5 years ago Ahdee ▴ 60
0
votes
0
replies
1.3k
views
Pathview input error: non-numeric variable in data frame
pathview kegg pathways package
6.9 years ago anc.informatics • 0
1
vote
5
replies
3.8k
views
KEGG enrichment for non-model
kegg pathway analysis non-model gage pathview
updated 4.1 years ago by • 0 • written 7.1 years ago by ▴ 40
0
votes
4
replies
3.3k
views
pathview: Warning: Download of hsa04110 xml and png files failed!
pathview
7.2 years ago masamiwata • 0
1
vote
4
replies
2.0k
views
Pathview error: ran fine yesterday
pathview
updated 7.3 years ago by 25k • written 8.2 years ago by ▴ 10
0
votes
1
reply
2.3k
views
Pathview results interpretation
pathview interpretation
7.3 years ago Aurora ▴ 20
146 results • Page 1 of 3
Recent ...
Replies
Comment: How to account for solvent controls in DESeq2 when comparing follicular vs lutea by snijesh ▴ 200
I would like to clarify whether the command `res <- results(dds, name = "phaseLP.conditionTreated")` is the correct approach to generate …
Comment: How to account for solvent controls in DESeq2 when comparing follicular vs lutea by James W. MacDonald 68k
Not sure I understand. You ask how to do something and then show how one would do so.
Comment: DiffBind getting Fold values of near 0 by littlefishes20 ▴ 10
Same issues. All peaks return to a fold near 0, although they are significant when visualizing in IGV. Please find the MAplot and volcanoPl…
Comment: How to account for solvent controls in DESeq2 when comparing follicular vs lutea by snijesh ▴ 200
I have checked DEGs between Solvent Control (SC) of FP and LP and there are noticebale differences in terms of DEGs. ``` # Checking SC in …
Answer: A0A287BB68 not recognized as UNPROT key in org.Ss.eg.db using AnnotationDbi::sel by James W. MacDonald 68k
Apparently it's been over-ridden by a different UniProtKB ID ``` > select(org.Ss.eg.db, "MYH11", "UNIPROT", "SYMBOL") 'select()' retu…
Votes
How to account for solvent controls in DESeq2 when comparing follicular vs luteal phase?
Answer: How to account for solvent controls in DESeq2 when comparing follicular vs lutea
Answer: How to account for solvent controls in DESeq2 when comparing follicular vs lutea
Comment: Using DESeq2 on single cell RNA Seq data of same cell type but different conditi
Can NanoString data be analyzed using DESeq2?
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