Showing : pathview • reset
0
votes
1
reply
189
views
Help with identifying genes mapped to KEGG pathway using pathview
pathview
updated 4 weeks ago by ★ 3.9k • written 5 weeks ago by • 0
0
votes
3
replies
1.1k
views
pathview error "negative length vectors are not allowed
pathview kegg KEGG
updated 6 months ago by ▴ 20 • written 7 months ago by • 0
0
votes
0
replies
507
views
SSL connect error in e.g. pathview from R version 4 in Windows 10
pathview SSL curl
9 months ago Matthias • 0
1
vote
4
replies
1.0k
views
pathview - a species in KEGG pathway but not in 'korg'
pathview KEGG Oryza_sativa
10 months ago Jiyoung Lee • 0
1
vote
1
reply
1.2k
views
Error with Pathview: Bad Request (HTTP 400)
KEGGREST pathview R
updated 12 months ago by ★ 3.9k • written 12 months ago by • 0
0
votes
2
replies
1.2k
views
pathview: Warning: Failed to download KEGG xml/png files, hsa04110 skipped!
pathview
13 months ago 덕윤 • 0
4
votes
3
replies
3.2k
views
only 0's may be mixed with negative subscripts
pathview
updated 14 months ago by ▴ 10 • written 7.4 years ago by ▴ 30
1
vote
3
replies
1.2k
views
Many NAs using TAIR IDs for plotting KEGG pathways using pathview
KEGG TAIR_IDs KEGGdzPathwaysGEO pathview
updated 16 months ago by 65k • written 17 months ago by • 0
4
votes
6
replies
3.6k
views
Pathview unable to download pathways
clusterProfiler KEGGgraph clusterpr KEGG pathview
updated 20 months ago by ★ 3.9k • written 22 months ago by ▴ 10
3
votes
13
replies
2.5k
views
pathview says my nonmodel species is unknown: "species invalid"
KEGGREST KEGG gage pathview
20 months ago • updated 14 months ago nute11a ▴ 10
0
votes
1
reply
786
views
Pathview error Warning: Parsing ./mmu04928.xml file failed, please check the file!
KEGGgraph pathview
updated 22 months ago by ★ 3.9k • written 22 months ago by • 0
0
votes
1
reply
1.2k
views
Help with Pathview: No annotation package for a species, gene symbols not mapped!
annotation_package not_available_in_BioConductor pathview
updated 19 months ago by • 0 • written 2.2 years ago by • 0
2
votes
2
replies
1.0k
views
pathview returns incorrect mappings for yeast
org.Sc.sgd.db org.Sc pathview
2.3 years ago • updated 2.2 years ago chase.mateusiak • 0
0
votes
3
replies
1.1k
views
pathview: unable to use option "out.suffix"
pathview
updated 2.8 years ago by ★ 1.6k • written 2.8 years ago by • 0
0
votes
2
replies
1.8k
views
Drawing custom KEGG pathways
pathview KEGG
2.9 years ago curiousmind007 ▴ 10
1
vote
2
replies
821
views
Pathview won't render some KEGG pathways
pathview
3.0 years ago • updated 2.9 years ago Duncan • 0
1
vote
2
replies
1.5k
views
PATHVIEW incorrect values being plotted in output
pathview org.Hs.eg.db
3.0 years ago Rodrigo • 0
44
votes
29
replies
11k
views
.onLoad failed in loadNamespace() for 'org.Hs.eg.db'
org.Hs.eg.db pathview
updated 3.0 years ago by ▴ 130 • written 3.0 years ago by ▴ 160
0
votes
1
reply
915
views
News: SBGNview manuscript on bioRxiv now
pathway SBGNview Reactome pathview PANTHER
written 3.1 years ago by ★ 1.6k
0
votes
0
replies
909
views
Job: Biostatistics/Bioinformatics Research Scientist at UNC Charlotte
singlecellRNA-Seq pathview statistics R
3.1 years ago • updated 3.0 years ago Luo Weijun ★ 1.6k
6
votes
5
replies
1.5k
views
KEGG analysis for plasmodium
KEGG gage gageData pathview
updated 3.1 years ago by ★ 1.6k • written 3.1 years ago by • 0
1
vote
1
reply
1.1k
views
News: SBGNview: Data Analysis, Integration and Visualization on 5000+ Pathways/3000+ Species
SBGNview pathways SBGNview.data pathview visualization
3.2 years ago • updated 3.1 years ago Luo Weijun ★ 1.6k
1
vote
2
replies
1.2k
views
Can I create a gene set using GAGE?
gage pathview gageData
written 3.3 years ago by ▴ 30
0
votes
1
reply
813
views
Change colors pathview
pathview
updated 3.4 years ago by ★ 1.6k • written 3.4 years ago by ▴ 30
0
votes
0
replies
910
views
Job: Biostatistics/Bioinformatics Research Scientist at UNC Charlotte
R statistics pathview singlecellRNA-Seq
3.4 years ago • updated 3.1 years ago Luo Weijun ★ 1.6k
0
votes
0
replies
1.1k
views
Pathview: empty metabolic map
pathview
3.5 years ago landenshanie ▴ 40
0
votes
2
replies
1.2k
views
Hightlight genes/metabolites in Pathview and ReactomePA
pathview ReactomePA
updated 3.8 years ago by 65k • written 3.8 years ago by • 0
0
votes
0
replies
596
views
Pathview colors only matching ids?
pathview
3.8 years ago okna0215 ▴ 10
1
vote
0
replies
920
views
Pathview : why are some genes not colored?
pathview rna-seq
3.8 years ago okna0215 ▴ 10
0
votes
1
reply
769
views
Argument map.symbol converting IDs even when its value is FALSE
pathview
updated 3.9 years ago by ★ 3.9k • written 5.1 years ago by • 0
0
votes
1
reply
706
views
Multiple samples in pathview with different colors
pathview multiple samples
updated 2.9 years ago by • 0 • written 4.2 years ago by • 0
0
votes
0
replies
874
views
gage function problem in R
gage R kegg pathview
updated 4.2 years ago by 41k • written 4.2 years ago by • 0
4
votes
4
replies
1.7k
views
How I interpret this plot from pathview
pathview kegg r pathway
4.5 years ago • updated 4.4 years ago AZ ▴ 30
0
votes
0
replies
949
views
KEGG pathway analysis using gage/pathview non KEGG organism duplicate K IDs
gage pathview KEGG Gene enrichment analysis
4.5 years ago MimR • 0
0
votes
3
replies
1.2k
views
None of the genes or compounds mapped to the pathway!
pathview AnnotationDbi
updated 4.6 years ago by 41k • written 4.6 years ago by • 0
0
votes
0
replies
966
views
Modifying a Pathview function which needs an internet connection so that it can work without an internet connection.
Pathview Gene Mapping KEGG
4.6 years ago omarrafiqued ▴ 50
0
votes
0
replies
696
views
pathview : kegg gene ID in the visualisation ?
pathview
4.7 years ago cedric.vmdl • 0
0
votes
2
replies
1.2k
views
Issue with xml files downloaded with `pathview()`
pathview kegg xml
updated 4.8 years ago by ★ 1.6k • written 4.8 years ago by ▴ 10
0
votes
2
replies
1.8k
views
pathview: object 'bods' not found
pathview
updated 4.8 years ago by ▴ 10 • written 5.6 years ago by • 0
0
votes
1
reply
814
views
Pathview won't colour even with matching IDs
pathview
5.1 years ago francesco.gualdrini • 0
0
votes
0
replies
775
views
Help with mapping Kegg hsa01100 using pathview
kegg pathway pathview
5.1 years ago Ahdee ▴ 50
0
votes
0
replies
957
views
Pathview input error: non-numeric variable in data frame
pathview kegg pathways package
5.6 years ago anc.informatics • 0
1
vote
5
replies
2.9k
views
KEGG enrichment for non-model
kegg pathway analysis non-model gage pathview
updated 2.8 years ago by • 0 • written 5.8 years ago by ▴ 40
0
votes
4
replies
2.7k
views
pathview: Warning: Download of hsa04110 xml and png files failed!
pathview
5.8 years ago masamiwata • 0
1
vote
4
replies
1.6k
views
Pathview error: ran fine yesterday
pathview
updated 5.9 years ago by 25k • written 6.9 years ago by ▴ 10
0
votes
1
reply
1.6k
views
Pathview results interpretation
pathview interpretation
5.9 years ago Aurora ▴ 20
0
votes
2
replies
3.6k
views
Cannot open URL 'http://rest.kegg.jp/get/osaNA/kgml': HTTP status was '400 Bad Request'
gage gage package pathview rna-seq
updated 2.1 years ago by • 0 • written 6.2 years ago by • 0
0
votes
0
replies
1.3k
views
pathview and gage server connection issue
pathview gage pathway analysis kegg visualization
6.2 years ago Luo Weijun ★ 1.6k
1
vote
1
reply
1.4k
views
Highlight ECs by KEGG module
pathview KEGG
updated 6.4 years ago by ★ 1.6k • written 6.4 years ago by • 0
0
votes
0
replies
1.1k
views
Pathview: cannot save pathway "01100"
pathview
6.4 years ago fansili2013 ▴ 50
50 results • Page 1 of 1
Recent ...
Replies
Comment: Math expression in shapeCustom legend in EnhancedVolcano by pl23 • 0
Thank you very much - that worked perfectly! Word of warning to those who try this: it screws up the other legends because of the markdown …
Answer: PCA plot suggestions by Michael Love 41k
For help with interpretation and design of analysis, I recommend working with a local statistician. Due to time restrictions, I can only…
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length by ussarizona ▴ 10
Hi Michael, Yes, I could figure it out what does the error mean. In my matrix I had the first colum GeneID while in my condition I only h…
Answer: Deseq2. decontXcounts not integers. Useful alternative? by Michael Love 41k
Another option would be to put the per sample estimated contamination in the design. This is for example how RUV etc help remove spurious D…
Answer: ATACseq merge peaks by ATpoint ★ 4.0k
That depends on your analysis. Typically, for differential analysis (and convenience) you would produce a single set of peaks (e.g. by merg…
Votes
Answer: Math expression in shapeCustom legend in EnhancedVolcano
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
Comment: Deseq2. decontXcounts not integers. Useful alternative?
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
biomaRt error: database disk image is malformed
Awards • All
Scholar to James W. MacDonald 65k
Popular Question to shepherl 3.8k
Scholar to Michael Love 41k
Supporter to JKim • 0
Popular Question to Gordon Smyth 50k
Locations • All
France, 12 minutes ago
San Diego, 58 minutes ago
Canada, 1 hour ago
EMBL Heidelberg, 1 hour ago
UPF, Barcelona, Spain, 1 hour ago
Traffic: 895 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6