Showing : pathways • reset
8
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14
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2.6k
views
reactome.db is not updated?
genesetenrichment pathways reactome.db
updated 7.1 years ago by ▴ 150 • written 7.5 years ago by ★ 1.2k
2
votes
0
replies
284
views
Saving the results of the topGO package as an R object (rda/rds file).
RNASeq GO topGO Pathways
16 months ago Ben ▴ 50
2
votes
2
replies
450
views
Help for Research Proposal
drug development pathways bioinformatics
updated 3.5 years ago by 13k • written 3.5 years ago by • 0
2
votes
1
reply
791
views
Problem with data not found using pathview package
pathways
updated 7.0 years ago by 59k • written 7.0 years ago by • 0
2
votes
1
reply
1.2k
views
Pathview graph with multiple states/samples or time series
Pathways graph Pathways graph
updated 4.3 years ago by • 0 • written 8.6 years ago by ★ 1.5k
2
votes
2
replies
411
views
Pathway analysis and GO terms analysis with goseq
KEGG Pathways GO goseq
updated 17 months ago by 59k • written 17 months ago by • 0
2
votes
0
replies
951
views
Job: PhD student positions in the areas of Bioinformatics, Computer Science and Biostatistics
bioinformatician job job phd R pathways Job
5.7 years ago Frank Kramer ▴ 60
2
votes
1
reply
608
views
pre-filtering gene sets for GSVA/ssGSEA
gsea ssgsea gsva pathways
updated 22 months ago by ★ 2.9k • written 22 months ago by ▴ 40
2
votes
4
replies
1.1k
views
ReactomePA / Reactome: Extraction of genes within a term
pathways reactomepa functional annotation
updated 4.0 years ago by ★ 1.2k • written 4.0 years ago by • 0
1
vote
2
replies
156
views
Pathway analysis of RNAseq data using goseq package
Pathways goseq RNASeqData
10 weeks ago • updated 8 weeks ago m.glymenaki • 0
1
vote
0
replies
779
views
Job: Bioinformatician/Computational Biologist - Dublin City, Ireland
bioinformatician job computational biology genomes pathways machine learning Job
4.6 years ago bulfin.triona ▴ 10
1
vote
3
replies
941
views
Metabolomic data analysis with papi / papiHtest() does not work as expected
Pathways PAPi Pathways PAPi
updated 8.5 years ago by ▴ 20 • written 8.5 years ago by ★ 12k
1
vote
3
replies
3.1k
views
Pathview None of the genes or compounds mapped to the pathway
pathview pathways KEGG empty map
updated 10 months ago by • 0 • written 6.4 years ago by ▴ 10
1
vote
1
reply
427
views
News: SBGNview: Data Analysis, Integration and Visualization on 5000+ Pathways/3000+ Species
SBGNview pathways SBGNview.data pathview visualization
14 months ago Luo Weijun ★ 1.5k
1
vote
1
reply
1.8k
views
miRNA- KEGG
Pathways Pathways
updated 10.2 years ago by ▴ 610 • written 10.2 years ago by ▴ 290
1
vote
15
replies
2.2k
views
reactome.db: reactome IDs not mapped to pathway names
annotation pathways
updated 7.1 years ago by ▴ 150 • written 7.6 years ago by ★ 1.9k
0
votes
5
replies
1.5k
views
GSEA and Broad gene sets
Pathways GSEABase Pathways GSEABase
updated 14.5 years ago by ★ 1.2k • written 14.5 years ago by ▴ 30
0
votes
0
replies
679
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postdoc available
Pathways Network Classification Cancer Pathways Network Classification Cancer
18.4 years ago Jean-Philippe Vert ▴ 10
0
votes
0
replies
2.1k
views
Postdoctoral Fellow - Bioinformatics - Singapore, IMCB, Biopolis
Genetics Metabolomics Pathways Cancer Genetics Metabolomics Pathways Cancer
10.7 years ago Emilie Bard ▴ 10
0
votes
2
replies
594
views
index between genes and pathways
Pathways GO Yeast Pathways GO Yeast
updated 18.5 years ago by ★ 5.5k • written 18.5 years ago by ▴ 80
0
votes
0
replies
804
views
Courses in Practical DNA Microarray Analysis 2006
Microarray Genetics Pathways Preprocessing Classification Cancer Microarray Genetics
16.4 years ago Wolfgang Huber 13k
0
votes
1
reply
611
views
Limma issues.
Pathways limma Pathways limma
updated 18.5 years ago by 45k • written 18.5 years ago by ▴ 150
0
votes
0
replies
790
views
error in plotKEGGGraph
Pathways GLAD KEGGgraph Pathways GLAD KEGGgraph
11.6 years ago Robert M. Flight ▴ 280
0
votes
5
replies
1.1k
views
extracting interactions between members of the KEGG pathways
Pathways Infrastructure Cancer graph Pathways Infrastructure Cancer graph
updated 16.2 years ago by ★ 5.5k • written 16.2 years ago by ▴ 90
0
votes
0
replies
719
views
BIRD
Pathways microRNA Pathways microRNA
16.0 years ago Prof.Roland Wagner ▴ 60
0
votes
1
reply
552
views
Gene set analysis/Global test with 3 replicates
Pathways Pathways
updated 15.9 years ago by ▴ 550 • written 15.9 years ago by ▴ 500
0
votes
0
replies
858
views
BIRD: Fiest internation conference : Bioinformatics in Research and Development
Pathways microRNA Pathways microRNA
15.8 years ago Prof.Roland Wagner ▴ 60
0
votes
1
reply
781
views
athPkgBuilder data source
Annotation Pathways GO probe oligo Annotation Pathways GO probe oligo
updated 15.8 years ago by ▴ 250 • written 15.8 years ago by ▴ 870
0
votes
0
replies
977
views
BIRD Call for papers and posrters: New submission deadline September 15
Pathways microRNA Pathways microRNA
15.8 years ago Prof.Roland Wagner ▴ 60
0
votes
0
replies
499
views
a simple question
Pathways Pathways
15.7 years ago Weiwei Shi ★ 1.2k
0
votes
0
replies
676
views
in case you have a visualization paper to submit
Microarray Alignment Pathways Visualization Microarray Alignment Pathways Visualization
15.2 years ago Vincent J. Carey, Jr. 6.6k
0
votes
0
replies
577
views
heatmap and hcluster from limma out put object
Pathways limma Pathways limma
16.8 years ago Gordon Smyth 45k
0
votes
0
replies
495
views
heatmap and hcluster from limma out put object
Pathways limma Pathways limma
16.8 years ago Marcelo Luiz de Laia ▴ 770
0
votes
8
replies
1.1k
views
AnnBuilder and Kegg
Pathways GO Survival Cancer Organism annotate affydata vsn AnnBuilder globaltest GO vsn
updated 15.5 years ago by ▴ 170 • written 15.5 years ago by ★ 2.9k
0
votes
0
replies
448
views
nf kappa pathway
Pathways Pathways
16.9 years ago Auer Michael ▴ 250
0
votes
0
replies
481
views
how to find the children identifiers of a specific KEGGidentifier in R??
Microarray Annotation Pathways GO Microarray Annotation Pathways GO
15.0 years ago Francois Pepin ★ 1.3k
0
votes
3
replies
909
views
R: Pathway Information
Genetics Pathways Cancer probe globaltest Genetics Pathways Cancer probe globaltest
updated 16.9 years ago by ▴ 360 • written 16.9 years ago by ★ 2.9k
0
votes
0
replies
1.1k
views
pathview vectorized output?
Pathways graph pathview Pathways graph pathview
8.3 years ago Luo Weijun ★ 1.5k
0
votes
0
replies
672
views
Mean Plots and Heat Maps for Chromosome Bands
Pathways hgu95av2 Pathways hgu95av2
13.5 years ago McGee, Monnie ▴ 300
0
votes
0
replies
594
views
PFAM annotation from HyperG
Pathways annotate Category Pathways annotate Category
15.0 years ago Dario Greco ▴ 310
0
votes
0
replies
542
views
The above Feelgood Formula enshrines the common philosophy that the better you treat people, the better they will work.
Pathways PROcess BRAIN Pathways PROcess BRAIN
14.9 years ago Neddy ▴ 10
0
votes
1
reply
631
views
html report of hyperGTest question
Pathways GO Pathways GO
updated 14.8 years ago by ★ 7.4k • written 14.8 years ago by ▴ 100
0
votes
2
replies
1.0k
views
KEGG package
Pathways Pathways
updated 14.8 years ago by ★ 2.9k • written 14.8 years ago by ▴ 130
0
votes
2
replies
670
views
stat/math question on Category vignette
Pathways Category Pathways Category
updated 14.8 years ago by ★ 7.4k • written 14.8 years ago by ▴ 890
0
votes
1
reply
688
views
KEGGSOAP: color.pathway.by.objects
Pathways KEGGSOAP Pathways KEGGSOAP
updated 14.8 years ago by ★ 2.9k • written 14.8 years ago by ▴ 30
0
votes
2
replies
787
views
KEGG pathway
Pathways Pathways
updated 14.7 years ago by ★ 7.2k • written 14.7 years ago by ▴ 130
0
votes
0
replies
1.2k
views
BIRD 2008 Conference
Genetics Pathways Cancer microRNA Genetics Pathways Cancer microRNA
14.4 years ago Prof. Roland Wagner ▴ 100
0
votes
5
replies
1.9k
views
Help using ENSMUSG ids in GOstats
Microarray Pathways GOstats Microarray Pathways GOstats
updated 14.0 years ago by ★ 5.5k • written 14.0 years ago by ▴ 30
0
votes
8
replies
1.2k
views
Filtering gene list prior to statistical testing
Pathways Pathways
updated 13.9 years ago by ★ 5.5k • written 13.9 years ago by ▴ 40
0
votes
3
replies
1.4k
views
hyperGTest, KEGG
Annotation Pathways multtest siggenes RBGL GOstats Annotation Pathways multtest siggenes
updated 15.1 years ago by ★ 7.4k • written 15.1 years ago by ▴ 80
50 results • Page 1 of 1
Recent ...
Replies
Comment: CPM after RUVseq by James W. MacDonald 59k
Also, you might be confused about something. CPM is counts/million counts, which *uses library size to scale normalize* and logCPM is just…
Comment: CPM after RUVseq by James W. MacDonald 59k
You shouldn't use CPM or logCPM for any of the steps! To use `RUVr` you need to fit a preliminary model using `edgeR`, which takes counts a…
Comment: CPM after RUVseq by Jess • 0
Thank you James! It hadn't occurred to me to input CPM rather than logCPM which is why my df$NormalizedCounts didn't exceed 17ish in valu…
Answer: RPX PXDataset error by Laurent Gatto 1.5k
- From the URL in the error, it looks like you have the latest (or a recent) `rpx` version. It is generally recommended to add the output o…
Answer: Package name already exists due to previous issue by shepherl 3.1k
This has been resolved. There needed to be a manual intervention by the core team to remove the old issue from the issue tracker database.…
Votes
Answer: CPM after RUVseq
Comment: Merging two plated in R
Answer: Merging two plated in R
Answer: Merging two plated in R
A: Can we use glmQLFit instead of glmFit and then glmLRT in edgeR
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