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qpcr
•
reset
0
votes
0
replies
284
views
nondetects and technical replicates
qPCR
nondetects
7 months ago
Ed Siefker
▴ 230
0
votes
0
replies
645
views
How to perform a cluster analysis in RT-qPCR or HT-qPCR results?
cluster
qpcr
qpcrNorm
clusterProfiler
HTqPCR
19 months ago
Javier
• 0
0
votes
2
replies
1.6k
views
log2FoldChange calculation in DESeq2
DESeq2
RNASeq
qPCR
qPCRData
2.8 years ago
Claire
• 0
3
votes
0
replies
519
views
Creating qPCRset for nondetects anlaysis from QuantStudio data
nondetects
qPCR
qPCRData
3.1 years ago
jhackett
▴ 30
3
votes
4
replies
3.2k
views
Using limma for the analysis of qPCR data
NormqPCR
EasyqpcR
qPCR
HTqPCR
limma
updated 2.6 years ago by
Ming
▴ 380 • written 3.4 years ago by
enricoferrero
▴ 660
0
votes
1
reply
786
views
Most liked/utilized qPCR analysis package
qPCR
updated 6.1 years ago by
Gordon Smyth
51k • written 6.1 years ago by
rbronste
▴ 60
0
votes
0
replies
803
views
NormqPCR Package query
SelectHK
qpcr
Genorm
6.2 years ago
jingchakvk
• 0
0
votes
0
replies
835
views
HTqPCR trouble with changeCtLayout
htqpcr
qPCR
6.3 years ago
samantha_jeschonek
• 0
1
vote
7
replies
1.7k
views
EDGE: Persistent lrt() and odp() command pi0est() error due to low p values
edge
qpcr
qvalue
7.3 years ago • updated 6.4 years ago
joe.d.moore.ii
• 0
1
vote
4
replies
1.8k
views
ddCT Package for StepOnePlus qPCR output
qPCR
ddCt
geneexpression
updated 6.9 years ago by
Zhang, Jitao David
▴ 120 • written 6.9 years ago by
rbronste
▴ 60
0
votes
0
replies
895
views
Batch Correction in HTqPCR?
qPCR
htqpcr
7.4 years ago
bradley
• 0
1
vote
0
replies
1.9k
views
DE analysis of PCR array [was: dataset dim for siggenes]
qPCR
Normalization
multtest
limma
siggenes
9.8 years ago • updated 7.4 years ago
Gordon Smyth
51k
0
votes
0
replies
1.1k
views
Replicating read.qPCR - "attribute on NULL"
qpcr
R
7.8 years ago
t.f.jones
• 0
0
votes
0
replies
873
views
select samples for qPCR
qpcr
sample
8.8 years ago
Frederico Moraes Ferreira
▴ 100
1
vote
3
replies
2.5k
views
ddCt calculation using bioconductor package
ddct
qPCR
updated 3.0 years ago by
Pengcheng Yang
▴ 60 • written 9.3 years ago by
gv
▴ 40
1
vote
2
replies
1.7k
views
qRT-PCR Sample Maximization software analysis and proper experimental design advice
qPCR
Sample Maximization Analysis
Experimental Design
qRT-PCR
updated 9.1 years ago by
Gordon Smyth
51k • written 9.1 years ago by
Marcelo Laia
▴ 450
1
vote
1
reply
1.8k
views
Are the logFC confidence intervals returned by topTable adjusted for multiple comparisons?
Microarray
qPCR
limma
updated 9.7 years ago by
Gordon Smyth
51k • written 9.8 years ago by
Calin-Jageman, Robert
▴ 30
0
votes
5
replies
1.5k
views
dataset dim for siggenes
qPCR
limma
siggenes
updated 9.8 years ago by
James W. MacDonald
66k • written 9.8 years ago by
Frederico Moraes Ferreira
▴ 100
0
votes
1
reply
1.2k
views
deseq2 for pair-wise analysis
qPCR
qPCR
updated 9.8 years ago by
Michael Love
42k • written 9.8 years ago by
Guest User
★ 13k
0
votes
0
replies
1.3k
views
EasyqPCR package - extracting Standard error values
qPCR
EasyqpcR
qPCR
EasyqpcR
10.0 years ago
Tommaso Raffaello
▴ 60
1
vote
0
replies
1.0k
views
HTqPCR package data layout - how flexible is it?
qPCR
qPCR
10.0 years ago
Guest User
★ 13k
0
votes
0
replies
4.1k
views
Bioconductor 2.14 is released
BiocViews
aCGH
SNP
Sequencing
RNASeq
ChIPSeq
miRNA
Microarray
qPCR
Metabolomics
Coverage
10.2 years ago
Dan Tenenbaum
★ 8.2k
0
votes
2
replies
2.2k
views
First time use of limma for two-color agilent array analysis
qPCR
limma
GeneSpring
qPCR
limma
GeneSpring
updated 10.3 years ago by
James W. MacDonald
66k • written 10.3 years ago by
Calin-Jageman, Robert
▴ 30
0
votes
2
replies
1.6k
views
creating a qPCRset from Fluidigm 96*96 arrays in HTqPCR
qPCR
qPCR
updated 10.3 years ago by
Kipper Fletez-Brant
▴ 150 • written 10.3 years ago by
Norm Allaire
▴ 50
0
votes
5
replies
1.7k
views
SCAN.UPC for Illumina arrays?
RNASeq
qPCR
affy
oligo
frma
RNASeq
qPCR
affy
oligo
frma
updated 10.6 years ago by
Stephen Piccolo
▴ 590 • written 10.6 years ago by
Tim Triche
★ 4.2k
0
votes
0
replies
1.5k
views
ddCt calculation and statistics
qPCR
ddCt
qPCR
ddCt
10.8 years ago
Guest User
★ 13k
0
votes
0
replies
1.2k
views
test qPCR data for differential expression
qPCR
qPCR
10.9 years ago
Andreia Fonseca
▴ 810
0
votes
17
replies
2.7k
views
[Bioc] RNAseq less sensitive than microarrays? Is it a statistical issue?
Sequencing
RNASeq
Microarray
qPCR
Coverage
edgeR
DESeq
Sequencing
RNASeq
Microarray
qPCR
updated 11.1 years ago by
Steve Lianoglou
★ 13k • written 11.1 years ago by
Lucia Peixoto
▴ 330
0
votes
1
reply
4.4k
views
EdgeR vs voom, what to consider when deciding which to use
RNASeq
qPCR
edgeR
RNASeq
qPCR
edgeR
updated 11.2 years ago by
Steve Lianoglou
★ 13k • written 11.2 years ago by
Lucia Peixoto
▴ 330
0
votes
0
replies
1.1k
views
workflow from NormqPCR 5.1 to 5.3
qPCR
NormqPCR
qPCR
NormqPCR
11.3 years ago
James Perkins
▴ 120
0
votes
0
replies
1.2k
views
workflow from NormqPCR 5.1 to 5.3
qPCR
NormqPCR
qPCR
NormqPCR
11.3 years ago
Guest User
★ 13k
0
votes
2
replies
1.9k
views
reading in data in ReadqPCR
qPCR
Annotation
HTqPCR
qPCR
Annotation
HTqPCR
11.3 years ago
Guest User
★ 13k
0
votes
1
reply
1.3k
views
replicating ReadqPCR
qPCR
qPCR
updated 11.3 years ago by
james perkins
▴ 300 • written 11.3 years ago by
Guest User
★ 13k
0
votes
1
reply
2.2k
views
Bioconductor Digest, Vol 120, Issue 12
Microarray
qPCR
Coverage
Annotation
Pathways
Visualization
Cancer
Breast
Organism
affy
11.3 years ago
Matthew Thornton
▴ 360
0
votes
2
replies
2.0k
views
HTqPCR problem with creation of qPCRset
qPCR
HTqPCR
qPCR
HTqPCR
updated 11.3 years ago by
James W. MacDonald
66k • written 11.3 years ago by
Elisabeth Gilis
▴ 20
0
votes
0
replies
1.1k
views
Error Bars on EdgeR
qPCR
qPCR
11.3 years ago
Ian Sudbery
▴ 30
0
votes
0
replies
1.3k
views
structure of cfx file for HTqPCR
Microarray
qPCR
cycle
HTqPCR
Microarray
qPCR
cycle
HTqPCR
11.4 years ago
Guest User
★ 13k
0
votes
0
replies
1.6k
views
Biorad iCycler cfx manager files and HTqPCR
Microarray
qPCR
HTqPCR
a4
Microarray
qPCR
HTqPCR
a4
11.4 years ago
b1gorsuch@comcast.net
▴ 20
1
vote
1
reply
1.2k
views
qRT-PCR - reading tab-delimited file (biol & tech replicates)
qPCR
ReadqPCR
qPCR
ReadqPCR
11.4 years ago
boczniak767
▴ 740
0
votes
0
replies
874
views
Using different file formats with oligo and analysis packages using oligo
SNP
Microarray
qPCR
cycle
SNP
Microarray
qPCR
cycle
11.4 years ago
Hans Thompson
▴ 30
0
votes
0
replies
1.1k
views
RankProd absurd results
qPCR
RankProd
qPCR
RankProd
11.5 years ago
Guest User
★ 13k
0
votes
0
replies
3.2k
views
Bioconductor 2.11 is released
BiocViews
SNP
Transcription
Sequencing
miRNA
Microbiome
Microarray
qPCR
Genetics
Coverage
11.7 years ago
Dan Tenenbaum
★ 8.2k
0
votes
0
replies
742
views
Analyzing expression Affymetrix Hugene1.0.st array
qPCR
qPCR
11.7 years ago
Dario Strbenac
★ 1.5k
0
votes
0
replies
891
views
sizepower
qPCR
GUI
qPCR
GUI
11.7 years ago
Michael Salbaum
▴ 80
0
votes
0
replies
1.6k
views
HTqPCR
qPCR
limma
ddCt
HTqPCR
qPCR
limma
ddCt
HTqPCR
11.8 years ago
Heidi Dvinge
★ 2.0k
0
votes
0
replies
1.1k
views
HTqPCR problems
Microarray
qPCR
GO
Preprocessing
GLAD
HTqPCR
Microarray
qPCR
GO
Preprocessing
GLAD
11.8 years ago
cfischer
▴ 10
0
votes
2
replies
2.2k
views
Fwd: help
qPCR
qPCR
updated 11.8 years ago by
Heidi Dvinge
★ 2.0k • written 11.8 years ago by
rakesh sharma
▴ 30
0
votes
0
replies
1.1k
views
HtqPCR-help
qPCR
qPCR
11.8 years ago
rakesh sharma
▴ 30
0
votes
0
replies
838
views
help
qPCR
qPCR
11.8 years ago
Guest User
★ 13k
0
votes
0
replies
887
views
help - HTqPCR and lightcycler
qPCR
HTqPCR
qPCR
HTqPCR
11.9 years ago
Heidi Dvinge
★ 2.0k
50 results • Page
1 of 1
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Comment: gds in GEOmetadb 2023-06-26 version is empty
by
Frederico Moraes Ferreira
▴ 100
Try axel -n 20 https://gbnci.cancer.gov/geo/GEOmetadb.sqlite.gz
Comment: Most enriched pathway is not expressed when modifying universe parameter
by
James W. MacDonald
66k
The default for `enrichGO` is to subset to those with a p-value<0.05. You don't adjust that default argument, so you shouldn't have any GO …
Answer: In a 3 group DEG analysis with three batches, can I use 1 group in all three bat
by
Michael Love
42k
You can compare A and C thanks to the sharing of samples from B across 1, 2 and 3.
Comment: Most enriched pathway is not expressed when modifying universe parameter
by
adripel
• 0
In the enrichGO results we have significant and non-significant enriched terms that are displayed. So why would an enriched term (significa…
Answer: Design formula, numeric contrast, and lfcshrink in deseq2
by
Michael Love
42k
For questions about how to construct the correct contrasts correspond to particular hypotheses, I recommend consulting with a local statist…
Votes
Comment: Most enriched pathway is not expressed when modifying universe parameter
Time-course, comparison of two groups
Answer: Behaviour of featureCounts when quantifying multi-mapping reads
Answer: GESA with certain gene list returns no result with human genom, but many result
Answer: Odd behavior of Rsubread::featureCounts when setting `nonOverlap = 0`
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