Showing : qpcr • reset
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nondetects and technical replicates
qPCR nondetects
6 months ago Ed Siefker ▴ 230
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614
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How to perform a cluster analysis in RT-qPCR or HT-qPCR results?
cluster qpcr qpcrNorm clusterProfiler HTqPCR
18 months ago Javier • 0
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2
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1.5k
views
log2FoldChange calculation in DESeq2
DESeq2 RNASeq qPCR qPCRData
2.7 years ago Claire • 0
3
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0
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501
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Creating qPCRset for nondetects anlaysis from QuantStudio data
nondetects qPCR qPCRData
3.0 years ago jhackett ▴ 30
3
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4
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3.0k
views
Using limma for the analysis of qPCR data
NormqPCR EasyqpcR qPCR HTqPCR limma
updated 2.5 years ago by ▴ 380 • written 3.3 years ago by ▴ 660
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1
reply
772
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Most liked/utilized qPCR analysis package
qPCR
updated 6.0 years ago by 50k • written 6.0 years ago by ▴ 60
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0
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777
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NormqPCR Package query
SelectHK qpcr Genorm
6.1 years ago jingchakvk • 0
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820
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HTqPCR trouble with changeCtLayout
htqpcr qPCR
6.2 years ago samantha_jeschonek • 0
1
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4
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1.8k
views
ddCT Package for StepOnePlus qPCR output
qPCR ddCt geneexpression
updated 6.8 years ago by ▴ 120 • written 6.8 years ago by ▴ 60
1
vote
7
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1.6k
views
EDGE: Persistent lrt() and odp() command pi0est() error due to low p values
edge qpcr qvalue
7.2 years ago • updated 6.3 years ago joe.d.moore.ii • 0
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878
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Batch Correction in HTqPCR?
qPCR htqpcr
7.3 years ago bradley • 0
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1.1k
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Replicating read.qPCR - "attribute on NULL"
qpcr R
7.7 years ago t.f.jones • 0
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0
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863
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select samples for qPCR
qpcr sample
8.6 years ago Frederico Moraes Ferreira ▴ 100
1
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2
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1.6k
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qRT-PCR Sample Maximization software analysis and proper experimental design advice
qPCR Sample Maximization Analysis Experimental Design qRT-PCR
updated 9.0 years ago by 50k • written 9.0 years ago by ▴ 450
1
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3
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2.4k
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ddCt calculation using bioconductor package
ddct qPCR
updated 2.9 years ago by ▴ 60 • written 9.2 years ago by ▴ 40
1
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0
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1.8k
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DE analysis of PCR array [was: dataset dim for siggenes]
qPCR Normalization multtest limma siggenes
9.7 years ago • updated 7.3 years ago Gordon Smyth 50k
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5
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1.5k
views
dataset dim for siggenes
qPCR limma siggenes
updated 9.7 years ago by 65k • written 9.7 years ago by ▴ 100
1
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1
reply
1.8k
views
Are the logFC confidence intervals returned by topTable adjusted for multiple comparisons?
Microarray qPCR limma
updated 9.6 years ago by 50k • written 9.7 years ago by ▴ 30
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1
reply
1.2k
views
deseq2 for pair-wise analysis
qPCR qPCR
updated 9.7 years ago by 42k • written 9.8 years ago by ★ 13k
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0
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1.3k
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EasyqPCR package - extracting Standard error values
qPCR EasyqpcR qPCR EasyqpcR
9.9 years ago Tommaso Raffaello ▴ 60
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1.0k
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HTqPCR package data layout - how flexible is it?
qPCR qPCR
9.9 years ago Guest User ★ 13k
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0
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4.1k
views
Bioconductor 2.14 is released
BiocViews aCGH SNP Sequencing RNASeq ChIPSeq miRNA Microarray qPCR Metabolomics Coverage
10.1 years ago Dan Tenenbaum ★ 8.2k
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2
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2.2k
views
First time use of limma for two-color agilent array analysis
qPCR limma GeneSpring qPCR limma GeneSpring
updated 10.2 years ago by 65k • written 10.2 years ago by ▴ 30
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2
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1.6k
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creating a qPCRset from Fluidigm 96*96 arrays in HTqPCR
qPCR qPCR
updated 10.2 years ago by ▴ 150 • written 10.2 years ago by ▴ 50
0
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5
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1.7k
views
SCAN.UPC for Illumina arrays?
RNASeq qPCR affy oligo frma RNASeq qPCR affy oligo frma
updated 10.5 years ago by ▴ 590 • written 10.5 years ago by ★ 4.2k
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0
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1.5k
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ddCt calculation and statistics
qPCR ddCt qPCR ddCt
10.7 years ago Guest User ★ 13k
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0
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1.2k
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test qPCR data for differential expression
qPCR qPCR
10.8 years ago Andreia Fonseca ▴ 810
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17
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2.7k
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[Bioc] RNAseq less sensitive than microarrays? Is it a statistical issue?
Sequencing RNASeq Microarray qPCR Coverage edgeR DESeq Sequencing RNASeq Microarray qPCR
updated 11.0 years ago by ★ 13k • written 11.0 years ago by ▴ 330
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1
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4.4k
views
EdgeR vs voom, what to consider when deciding which to use
RNASeq qPCR edgeR RNASeq qPCR edgeR
updated 11.1 years ago by ★ 13k • written 11.1 years ago by ▴ 330
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0
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1.1k
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workflow from NormqPCR 5.1 to 5.3
qPCR NormqPCR qPCR NormqPCR
11.2 years ago James Perkins ▴ 120
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0
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1.1k
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workflow from NormqPCR 5.1 to 5.3
qPCR NormqPCR qPCR NormqPCR
11.2 years ago Guest User ★ 13k
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1
reply
1.3k
views
replicating ReadqPCR
qPCR qPCR
updated 11.2 years ago by ▴ 300 • written 11.2 years ago by ★ 13k
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2
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1.9k
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reading in data in ReadqPCR
qPCR Annotation HTqPCR qPCR Annotation HTqPCR
11.2 years ago Guest User ★ 13k
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1
reply
2.2k
views
Bioconductor Digest, Vol 120, Issue 12
Microarray qPCR Coverage Annotation Pathways Visualization Cancer Breast Organism affy
11.2 years ago Matthew Thornton ▴ 350
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2
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2.0k
views
HTqPCR problem with creation of qPCRset
qPCR HTqPCR qPCR HTqPCR
updated 11.2 years ago by 65k • written 11.2 years ago by ▴ 20
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0
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1.1k
views
Error Bars on EdgeR
qPCR qPCR
11.2 years ago Ian Sudbery ▴ 30
0
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0
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1.3k
views
structure of cfx file for HTqPCR
Microarray qPCR cycle HTqPCR Microarray qPCR cycle HTqPCR
11.3 years ago Guest User ★ 13k
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0
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1.6k
views
Biorad iCycler cfx manager files and HTqPCR
Microarray qPCR HTqPCR a4 Microarray qPCR HTqPCR a4
11.3 years ago b1gorsuch@comcast.net ▴ 20
1
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1
reply
1.2k
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qRT-PCR - reading tab-delimited file (biol & tech replicates)
qPCR ReadqPCR qPCR ReadqPCR
11.3 years ago boczniak767 ▴ 720
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0
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863
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Using different file formats with oligo and analysis packages using oligo
SNP Microarray qPCR cycle SNP Microarray qPCR cycle
11.3 years ago Hans Thompson ▴ 30
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0
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1.1k
views
RankProd absurd results
qPCR RankProd qPCR RankProd
11.4 years ago Guest User ★ 13k
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0
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3.1k
views
Bioconductor 2.11 is released
BiocViews SNP Transcription Sequencing miRNA Microbiome Microarray qPCR Genetics Coverage
11.6 years ago Dan Tenenbaum ★ 8.2k
0
votes
0
replies
732
views
Analyzing expression Affymetrix Hugene1.0.st array
qPCR qPCR
11.6 years ago Dario Strbenac ★ 1.5k
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0
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878
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sizepower
qPCR GUI qPCR GUI
11.6 years ago Michael Salbaum ▴ 80
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0
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1.6k
views
HTqPCR
qPCR limma ddCt HTqPCR qPCR limma ddCt HTqPCR
11.7 years ago Heidi Dvinge ★ 2.0k
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0
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1.1k
views
HTqPCR problems
Microarray qPCR GO Preprocessing GLAD HTqPCR Microarray qPCR GO Preprocessing GLAD
11.7 years ago cfischer ▴ 10
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0
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1.1k
views
HtqPCR-help
qPCR qPCR
11.7 years ago rakesh sharma ▴ 30
0
votes
2
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2.2k
views
Fwd: help
qPCR qPCR
updated 11.7 years ago by ★ 2.0k • written 11.7 years ago by ▴ 30
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0
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828
views
help
qPCR qPCR
11.7 years ago Guest User ★ 13k
0
votes
0
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876
views
help - HTqPCR and lightcycler
qPCR HTqPCR qPCR HTqPCR
11.8 years ago Heidi Dvinge ★ 2.0k
50 results • Page 1 of 1
Recent ...
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Answer: Differential gene expression analysis results by ATpoint ★ 4.1k
Pease do not open multiple posts for the same issue: https://support.bioconductor.org/p/9158194/#9158222 The support site is not meant f…
Comment: deseq2 results by sajadahmad41454 • 0
thank you for your response, should i remove or discard that sample? since the red outlier on left represents one of healthy samples.
Comment: deseq2 results by swbarnes2 ★ 1.4k
It looks like the PCA plot of a real RNASeq experiment. The red outlier on the left might be the mathematical reason why you have few vali…
Comment: Multi-factorial, longitudinal disease progression analysis with unbalanced patie by Dylan.Sheerin • 0
Thank you very much, Gordon. I'll give voomLmFit a go!
Answer: Multi-factorial, longitudinal disease progression analysis with unbalanced patie by Gordon Smyth 50k
Including subjectID in the design matrix always accounts for unbalanced sampling and patient variation but subjects with incomplete records…
Votes
Comment: deseq2 results
Comment: deseq2 results
Answer: Multi-factorial, longitudinal disease progression analysis with unbalanced patie
Answer: Extremely small p-values using Limma for proteomic data
Bioconductor 3.19 is Released!
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