Bioconductor Qualitycontrol

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2.2k

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rna-seq GC-Content qualitycontrol

updated 8.1 years ago by Matthew McCormack ▴ 180 • written 8.1 years ago by NS ▴ 60

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1.4k

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NUSE qualitycontrol microarray

updated 7.9 years ago by Diego Diez ▴ 760 • written 7.9 years ago by jacorvar ▴ 40

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844

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QualityControl Alignment QuasR

updated 2.8 years ago by Michael Stadler ▴ 350 • written 2.8 years ago by h.kozlowski • 0

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1.1k

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Microarray OneChannel TwoChannel DifferentialExpression Preprocessing QualityControl affy

16.6 years ago Amin Moghaddasi ▴ 130

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3.4k

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GWASTools qualitycontrol HumanOmni5-4BeadChip GenomeStudio illumina

updated 7.6 years ago by Stephanie M. Gogarten ▴ 870 • written 7.6 years ago by Lna • 0

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1.6k

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limma affy probe qualitycontrol design and contrast matrix

updated 8.9 years ago by Gordon Smyth 48k • written 8.9 years ago by alakatos ▴ 130

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1.3k

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qc qualitycontrol arrayqualitymetrics mouse gene st 2.0 affymetrix

updated 6.3 years ago by James W. MacDonald 64k • written 6.3 years ago by n.lu • 0

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828

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qualitycontrol

updated 6.7 years ago by Mike Smith ★ 6.2k • written 6.7 years ago by XIA.PAN ▴ 20

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687

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QualityControl methylationArrayAnalysis

22 months ago zusman • 0

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1.0k

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limma one colour agilent microarrays qualitycontrol arrayqualitymetrics

7.1 years ago Bouzid.a ▴ 20

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917

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shinymethyl minfi epic microarray methylationepic qualitycontrol

6.8 years ago chelsey.ju • 0

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524

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folder quality QualityControl AffyExpress

3.0 years ago bastien_chassagnol • 0

12 results • Page 1 of 1

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Comment: Ensembl down??? by James W. MacDonald 64k

I normally caution against mapping between annotation sources (NCBI and Ensembl), as it usually doesn't work well. However, it is possible.…

Answer: NCBI protein conversion to CDNA and NCBI gene (in R) by James W. MacDonald 64k

I already showed you how to do this for gene symbols, and it's analogous for any other annotation ID. Please see the `AnnotationDbi` [vigne…

Comment: Obtaining rsIDs with ENSG and variant ID information by Robert Castelo ★ 3.0k

This is a large package, and when downloading and installing large packages it's often the case to get timeouts. Try setting a longer time …

Comment: How does Deseq2 deal with the row with zero when calculating size factors by ATpoint ★ 3.6k

> Because I found that if there is at least one gene without zero among all of the samples, the deseq2 runs smoothly. No, it doesn't. ``…

Comment: Obtaining rsIDs with ENSG and variant ID information by bd2000 • 0

Thank you for your answer. I've tried to download the package but it didn't work: Error in download.file(url, destfile, method, mode =…

Votes

Answer: biomaRt not working - lazy table error

Answer: Confused about the CPM and TMM normalization in edgeR

Answer: Differential gene expression analysis

Comment: Why is DMRcate not available for Bioconductor version 3.18?

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