Bioconductor Qualitycontrol

Showing : qualitycontrol • reset

votes

replies

4.4k

views

GWASTools qualitycontrol HumanOmni5-4BeadChip GenomeStudio illumina

updated 8.9 years ago by Stephanie M. Gogarten ▴ 890 • written 8.9 years ago by Lna • 0

votes

replies

2.8k

views

rna-seq GC-Content qualitycontrol

updated 9.4 years ago by Matthew McCormack ▴ 180 • written 9.4 years ago by NS ▴ 60

vote

replies

2.0k

views

limma affy probe qualitycontrol design and contrast matrix

updated 10.2 years ago by Gordon Smyth 52k • written 10.2 years ago by alakatos ▴ 130

votes

replies

1.8k

views

qc qualitycontrol arrayqualitymetrics mouse gene st 2.0 affymetrix

updated 7.6 years ago by James W. MacDonald 68k • written 7.6 years ago by n.lu • 0

votes

replies

1.7k

views

NUSE qualitycontrol microarray

updated 9.2 years ago by Diego Diez ▴ 760 • written 9.2 years ago by jacorvar ▴ 40

votes

1.5k

views

Microarray OneChannel TwoChannel DifferentialExpression Preprocessing QualityControl affy

17.8 years ago Amin Moghaddasi ▴ 130

votes

1.3k

views

QualityControl Alignment QuasR

updated 4.1 years ago by Michael Stadler ▴ 350 • written 4.1 years ago by h.kozlowski • 0

votes

replies

1.3k

views

limma one colour agilent microarrays qualitycontrol arrayqualitymetrics

8.4 years ago Bouzid.a ▴ 20

votes

replies

1.2k

views

QualityControl methylationArrayAnalysis

3.1 years ago zusman • 0

votes

replies

1.2k

views

shinymethyl minfi epic microarray methylationepic qualitycontrol

8.1 years ago chelsey.ju • 0

votes

replies

1.1k

views

qualitycontrol

updated 8.0 years ago by Mike Smith ★ 6.6k • written 8.0 years ago by XIA.PAN ▴ 20

votes

replies

784

views

folder quality QualityControl AffyExpress

4.3 years ago bastien_chassagnol • 0

12 results • Page 1 of 1

Recent ...

Replies

Comment: Using edgeR::voomLmFit for the analysis of paired clinical RNA-seq samples with by Gordon Smyth 52k

I generally recommend `block=individual` for unbalanced designs, to recover information from incomplete blocks. I would only be disuaded fr…

Comment: Using edgeR::voomLmFit for the analysis of paired clinical RNA-seq samples with by Devin ▴ 10

Thank you, Gordon, for your responses to all of my questions. For analysis A), in the case when a patient has either a missing timepoint or…

Comment: Using TPM from tximport of Salmon output for singscore by Kent • 0

Thanks Michael. Just out of curiosity, would you also use the same technique for things like clustering analysis or when looking at the abn…

Comment: GAGE kegg.gsets() self-signed certificate error by Lucas • 0

Hello, I ended up solving the issue by using the first strategy: Disable the SSL certificate Verification. I used the following code to …

Comment: Clarification on GOALL / GO2ALLORFs mapping by DavideSant • 0

Thank you for your answer James. I have to disagree though, at the SGD webpage you posted there is no indication that "GO:0045719 - negati…

Votes

Comment: Using edgeR::voomLmFit for the analysis of paired clinical RNA-seq samples with

Answer: Using edgeR::voomLmFit for the analysis of paired clinical RNA-seq samples with

Answer: Using TPM from tximport of Salmon output for singscore

Comment: Using TPM from tximport of Salmon output for singscore

Awards • All

Scholar to Gordon Smyth 52k