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qualitycontrol
•
reset
0
votes
0
replies
1.1k
views
getsex function error.
QualityControl
methylationArrayAnalysis
2.5 years ago
zusman
• 0
0
votes
1
reply
1.1k
views
Error when running qAlign from QuasR package for sequence alignment & QC.
QualityControl
Alignment
QuasR
updated 3.5 years ago by
Michael Stadler
▴ 350 • written 3.5 years ago by
h.kozlowski
• 0
0
votes
0
replies
656
views
AffyExpress choose relative path folder
folder
quality
QualityControl
AffyExpress
3.6 years ago
bastien_chassagnol
• 0
0
votes
2
replies
1.5k
views
Quality control for Affymetrix GeneChip Mouse Gene 2.0 ST Array
qc
qualitycontrol
arrayqualitymetrics
mouse gene st 2.0
affymetrix
updated 6.9 years ago by
James W. MacDonald
66k • written 6.9 years ago by
n.lu
• 0
3
votes
2
replies
975
views
Q score filter to each base in QualityScaledDNAStringSet
qualitycontrol
updated 7.4 years ago by
Mike Smith
★ 6.5k • written 7.4 years ago by
XIA.PAN
▴ 20
0
votes
0
replies
1.1k
views
Shinymethyl 850K Array quality control signal cutoffs
shinymethyl
minfi
epic microarray
methylationepic
qualitycontrol
7.4 years ago
chelsey.ju
• 0
2
votes
0
replies
1.2k
views
Quality Assessment of one color Agilent arrays?
limma
one colour
agilent microarrays
qualitycontrol
arrayqualitymetrics
7.8 years ago
Bouzid.a
▴ 20
1
vote
14
replies
3.9k
views
GWAS analysis with Illumina HumanOmni5-4 BeadChip - recommended software and workflow
GWASTools
qualitycontrol
HumanOmni5-4BeadChip
GenomeStudio
illumina
updated 8.2 years ago by
Stephanie M. Gogarten
▴ 870 • written 8.2 years ago by
Lna
• 0
2
votes
2
replies
1.6k
views
Manually compute NUSE score
NUSE
qualitycontrol
microarray
updated 8.6 years ago by
Diego Diez
▴ 760 • written 8.6 years ago by
jacorvar
▴ 40
4
votes
2
replies
2.5k
views
Quality control on RNA-Seq (level 3) data from TCGA
rna-seq
GC-Content
qualitycontrol
updated 8.7 years ago by
Matthew McCormack
▴ 180 • written 8.7 years ago by
NS
▴ 60
1
vote
2
replies
1.8k
views
array quality control, affy probes, contracts setting in limma, result interpretation and weights
limma
affy
probe
qualitycontrol
design and contrast matrix
updated 9.6 years ago by
Gordon Smyth
51k • written 9.6 years ago by
alakatos
▴ 130
0
votes
1
reply
1.3k
views
read.maimages problem under sun ?
Microarray
OneChannel
TwoChannel
DifferentialExpression
Preprocessing
QualityControl
affy
17.2 years ago
Amin Moghaddasi
▴ 130
12 results • Page
1 of 1
Recent ...
Replies
Comment: 'path' must be string
by
James W. MacDonald
66k
Yes. We already knew that from the error message, and I told you that in my previous email. The point wasn't to figure out *where* the err…
Comment: 'path' must be string
by
cpierce2
• 0
I ran the debugger and this is the line that causes the error: ``` if (any(startsWith(pkcData[["RTS_ID"]][1L], "RTS")) & any(startsWith(pr…
Comment: Generating surrogate variables across multiple variables of interest
by
Robert
• 0
Yes, we have several biomarkers, and a proteomic set, so we are characterizing each biomarker by it's proteomic association(s). The use for…
Comment: Error running tximeta
by
Guido Hooiveld
★ 4.0k
FYI (since I just finalized a run with `salmon`). For each sample (`.`) an output folder is created that contains 3 files (`cmd_info.json`…
Comment: Error running tximeta
by
Michael Love
42k
Tximeta uses the full directory. There are files that give the key information about the transcriptome. It's not a good idea to selectively…
Votes
Question: Deconvolution Methods on RNA-Seq Data (Mixed cell types)
Answer: Understanding how to contrast two treatments in DESeq2
Answer: Understanding how to contrast two treatments in DESeq2
Cannot extract TxFeatures for a defined GRanges object
Limma time series spline help
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Lluís Revilla Sancho
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maltethodberg
▴ 180
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Michael Love
42k
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Leonardo Collado Torres
★ 1.1k
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Gordon Smyth
51k
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