Showing : reportingtools • reset
1
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1.5k
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Having issues mapping gene Ids during ReportingTools::publish() from Bioconductor.
ReportingTools RNA-Seq RMarkdown
updated 4.6 years ago by 68k • written 4.6 years ago by ▴ 20
1
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4
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1.1k
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ReportingTools publish(): no image when .modifyDF argument is included
ReportingTools
updated 6.0 years ago by 68k • written 6.0 years ago by • 0
0
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1
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2.0k
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ReportingTools: Error using packet 1 arguments must have same length
reportingtools
6.3 years ago mmokrejs • 0
0
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0
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826
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Changing vertical scale to linear for expression reporting of DESeqDataSet
reportingtools deseq2
6.5 years ago trebbiano • 0
3
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7
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2.3k
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ReportingTools Segmentation fault
reportingtools reporting tools
updated 6.9 years ago by ▴ 10 • written 6.9 years ago by ▴ 20
2
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2
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1.4k
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How to add more columns to ReportingTools output?
reportingtools microarray annotation differential expression differential analysis
updated 7.3 years ago by 68k • written 7.3 years ago by • 0
0
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0
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1.8k
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Select what conditionsto graph in Report tools with Deseq containing multiple conditions
deseq2 ggplot2 reportingtools
8.4 years ago abass.conteh • 0
0
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3
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1.3k
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Error when installing ReportingTools
reportingtools
8.7 years ago Asma rabe ▴ 290
0
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4
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1.7k
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Error in GOFrame due to NA for unsupported organism (Gene Ontology)
reportingtools annotationhub gostats
updated 8.7 years ago by 68k • written 8.7 years ago by ▴ 20
2
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4
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1.4k
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ResrtingTools include pvalue NA
reportingtools deseq2 NA pvalue
updated 8.7 years ago by 43k • written 8.7 years ago by ▴ 10
0
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2
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2.2k
views
Generating database with non model species to be use by ReportingTools
reportingtools annotationdbi annotationhub ensembldb
updated 8.8 years ago by ★ 2.1k • written 8.8 years ago by ▴ 20
0
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8
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2.0k
views
ReportingTools include pvalue NA and comparissons
R reportingtools deseq2 pvalue coef
updated 8.8 years ago by 43k • written 8.8 years ago by ▴ 10
0
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1
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1.7k
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DESeq2 followed by Reporting tools lists blank ensemble gene ID's and symbols but has image, logFC and p-value intact in HTML file
deseq2 rnaseq reportingtools
updated 8.9 years ago by 43k • written 8.9 years ago by • 0
1
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4
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1.4k
views
Methods in ReportingTools
reportingtools
updated 9.5 years ago by ▴ 70 • written 9.5 years ago by • 0
0
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0
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1.4k
views
Change column width in ReportingTools
reportingtools
9.6 years ago benedikt.athmer • 0
1
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1
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1.3k
views
How to add search functions and additional fields to the html file of DESeq2 results created with ReportingTools
ReportingTools deseq2 hwriter
updated 9.7 years ago by 68k • written 9.7 years ago by ▴ 30
0
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2
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1.6k
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hwriter or reportingtools: open link in new tab?
hyperlink ReportingTools hwriter
9.9 years ago Wade Davis ▴ 60
2
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3
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1.7k
views
HTMLReport with Ensembl IDs, with multifactorial design
DESeq2 ReportingTools
updated 10.0 years ago by 68k • written 10.0 years ago by ▴ 180
4
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6
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3.1k
views
HTMLReport of DESeq2 results with Ensembl Gene Ids
reportingtools publish deseq2
updated 10.0 years ago by ▴ 180 • written 10.3 years ago by • 0
6
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1
reply
3.3k
views
[ReportingTools] HTMLReport of DESeq2 results using Ensembl Gene Ids
Sequencing Annotation convert biomaRt ReportingTools DESeq2 Sequencing Annotation convert
updated 10.2 years ago by ▴ 370 • written 11.3 years ago by ▴ 160
1
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6
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2.1k
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Problem on annotation of Deseq2 on reportingtools
Deseq2 reportingtools
updated 10.4 years ago by ▴ 70 • written 10.4 years ago by ▴ 40
0
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2
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1.2k
views
ReportingTools does not work with PFAMHyperGResult object
reportingtools
updated 10.5 years ago by 1.6k • written 10.5 years ago by • 0
0
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5
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2.9k
views
Issues about how to filter and annotate the MoGene-2_0-st and MoEx-1_0-st-v1 array probe sets
Annotation probe annotate annaffy oligo ReportingTools Annotation probe annotate annaffy
updated 10.8 years ago by ▴ 160 • written 10.8 years ago by 68k
0
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5
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1.9k
views
ReportingTools error message
DESeq ReportingTools DESeq2 DESeq ReportingTools DESeq2
10.8 years ago Assa Yeroslaviz ★ 1.5k
0
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0
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1.4k
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KEGG pathway analysis with ReportingTools
Pathways GO ReportingTools Pathways GO ReportingTools
11.0 years ago Mayte Suarez-Farinas ▴ 510
0
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3
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2.0k
views
ReportingTools and gene annotation
Annotation GO cycle ReportingTools DESeq2 Annotation GO cycle ReportingTools DESeq2
updated 11.1 years ago by 68k • written 11.1 years ago by ▴ 340
0
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7
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3.1k
views
[ReportingTools] and DESeq2 results, publish DESeqDataSet using resultsNames other than the default
Sequencing ReportingTools DESeq2 Sequencing ReportingTools DESeq2
updated 11.2 years ago by 68k • written 11.2 years ago by ▴ 30
0
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2
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1.8k
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Question about ReportingTools used with DESeq2
GO BSgenome BSgenome ReportingTools DESeq2 GO BSgenome BSgenome ReportingTools DESeq2
updated 11.3 years ago by 68k • written 11.3 years ago by ▴ 80
0
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1
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1.3k
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ReportingTools package
ReportingTools ReportingTools
updated 11.4 years ago by ▴ 10 • written 11.4 years ago by ▴ 160
0
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0
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986
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ReportingTools: formatting html report
Alignment ReportingTools Alignment ReportingTools
11.8 years ago Gabriel Becker ▴ 70
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0
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2.3k
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emacs org mode html export using jQuery DataTables (WAS: new package for generating interactive HTML reports)
Network limma GOstats GSEAlm edgeR ReportingTools Network limma GOstats GSEAlm edgeR
12.2 years ago Malcolm Cook ★ 1.6k
0
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12
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2.7k
views
new package for generating interactive HTML reports
Network limma GOstats GSEAlm edgeR ReportingTools Network limma GOstats GSEAlm edgeR
updated 12.2 years ago by ★ 1.6k • written 12.2 years ago by ▴ 20
32 results • Page 1 of 1
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Answer: Annotation package for Manduca sexta by shepherl 4.1k
Yes through the AnnotationHub ``` > library(AnnotationHub) > ah = AnnotationHub() snapshotDate(): 2024-10-28 > query(ah, "Manduc…
Comment: Ensembl site unresponsive via biomaRt by mdeea123 ▴ 10
Thanks for the link. I will contact them directly, I wish they had some sort of status page.
Comment: Ensembl site unresponsive via biomaRt by Mike Smith ★ 6.6k
I think this is an unrelated issue. The original post includes the message `Error: 'curl_parse_url' is not an exported object from 'namesp…
Comment: pairedGSEA input files by shdam ▴ 10
Hi Sara, Apologies for the slow response! James is exactly right. Both `salmon` and `kallisto` can produce transcript counts, if you map …
Comment: Unused arguments error without used arguments in GSVA? by michaelarringtony • 0
Perhaps from a direct call to gsva without the parameter [Sprunki Pyramixed][1] object [1]: https://pyramixed.io/
Votes
Comment: Limma comparing gene expression between base line and one treatment
Answer: Is there any chance to solve "the model matrix is not full rank" in DESeq2?
clusterProfiler-GO enrichment Error
A: Machine learning in R book
Data preparation and Machine learning on time course RNAseq data
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