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Showing :
singler
•
reset
0
votes
0
replies
29
views
input for singR function
Seurat_object
singe-cell
singleR
4 days ago
Paria
• 0
0
votes
0
replies
108
views
SingleR error with multiple references
SingleR
11 weeks ago
carlo
• 0
1
vote
1
reply
113
views
SingleR using TPM in a bulk RNA seq dataset
SingleR
updated 12 weeks ago by
ATpoint
★ 2.1k • written 12 weeks ago by
mea2712
• 0
0
votes
1
reply
293
views
Error in running: classifySingleR from SingleR package
SingleR
SingleCell
updated 6 months ago by
ATpoint
★ 2.1k • written 6 months ago by
amit.korngut
• 0
0
votes
0
replies
189
views
how to calculate similarity between each cluster in scRNA and bulk RNA-seq
SingleR
scRNAseq
7 months ago
Guandong Shang
▴ 40
3
votes
4
replies
668
views
Using SingleR for Single cell annotation with BulkRNASeq
SingleR
10 months ago • updated 9 months ago
rohitsatyam102
▴ 20
0
votes
1
reply
333
views
celldex error when downloading reference datasets
celldex
SingleR
updated 11 months ago by
Aaron Lun
★ 28k • written 11 months ago by
indigofreesia
• 0
15
votes
13
replies
1.5k
views
celldex ensembl gene annotation issue
SingleR
celldex
HumanPrimaryCellAtlasData
ensembl
updated 15 months ago by
xiang
▴ 10 • written 15 months ago by
immuno.dh
▴ 20
0
votes
1
reply
1.2k
views
Convert SummarizedExperiment to SingleCellExperiment Object
SingleCellExperiment
SummarizedExperiment
SingleR
updated 17 months ago by
ATpoint
★ 2.1k • written 17 months ago by
Gen
• 0
0
votes
2
replies
1.7k
views
Single R-- Error in is.null(rownames(x)) && nrow(x) : invalid 'y' type in 'x && y'
SingleR
updated 10 months ago by
13304885395
• 0 • written 19 months ago by
ntourtillott23
• 0
2
votes
3
replies
1.6k
views
Error in SingleR, no common genes between 'test' and 'ref'
SingleR
19 months ago • updated 18 months ago
Imtiaz
▴ 10
1
vote
2
replies
1.2k
views
After having the output from SingleR for cell type annotation, what's the next step to assign the cell type to each cluster
SingleCellSignalR
SingleCellWorkflow
SingleR
updated 21 months ago by
Aaron Lun
★ 28k • written 21 months ago by
FantasticAI
• 0
1
vote
1
reply
888
views
SingleR::mouseRNAseqData Error in UseMethod(filter_)
SingleR
ImmgenData()
mouseRNAseqData()
updated 23 months ago by
Mike Smith
★ 5.9k • written 23 months ago by
Collins
• 0
0
votes
1
reply
1.0k
views
SingleR and SCTransform
SingleR
updated 24 months ago by
Aaron Lun
★ 28k • written 24 months ago by
amel.zulji
▴ 20
1
vote
3
replies
766
views
SingleCellExperiment and SingleR for identifying T cell subsets
cellsubset
SingleR
SingleCellExperiment
2.1 years ago
achaillon
• 0
1
vote
5
replies
977
views
SingleR Error in getMethod(generic, "ANY")
singleR
rowMedians
getMethod
updated 2.3 years ago by
bongowongo
• 0 • written 2.3 years ago by
inzirio
▴ 10
1
vote
1
reply
687
views
Does SingleR return output for every cell it's given or only those that it can provide an annotation for?
SingleR
Single Cell
updated 2.3 years ago by
Aaron Lun
★ 28k • written 2.3 years ago by
w.gus.dunn
• 0
0
votes
6
replies
1.2k
views
Discrepancy between cell type and cluster using SingleCellExperiment and SingleR
singlecell
singlecellexperiment
umap
singleR
updated 2.4 years ago by
Aaron Lun
★ 28k • written 2.4 years ago by
lirongrossmann
▴ 70
1
vote
3
replies
626
views
Raw counts for reference dataset in single cell rnaseq
single cell
celldex
singleR
updated 2.4 years ago by
Aaron Lun
★ 28k • written 2.4 years ago by
lirongrossmann
▴ 70
0
votes
2
replies
784
views
most correlated genes in SingleR
singlecell
singleR
updated 2.4 years ago by
Aaron Lun
★ 28k • written 2.5 years ago by
lirongrossmann
▴ 40
0
votes
1
reply
626
views
predicting cell type of clusters using singleR
singleR
singlecell
updated 2.5 years ago by
Aaron Lun
★ 28k • written 2.5 years ago by
lirongrossmann
▴ 40
0
votes
3
replies
1.2k
views
marker genes in singleR
singleR
singlecell
singlecellexperiment
updated 2.5 years ago by
Aaron Lun
★ 28k • written 2.5 years ago by
lirongrossmann
▴ 40
8
votes
16
replies
2.5k
views
Cannot connect to ExperimentHub server
ExperimentHub
AnnotationHub
SingleR
updated 2.5 years ago by
shepherl
3.4k • written 2.5 years ago by
enricoferrero
▴ 650
0
votes
1
reply
594
views
pheatmap needs to be manually added to plot heatmaps
singler
bug
2.8 years ago
muad.abdelhay
▴ 10
0
votes
1
reply
473
views
Assay choice for cell type annotation using SingleR when batch effect present in profile
SingleR
MouseGastrulationData
updated 2.9 years ago by
Aaron Lun
★ 28k • written 2.9 years ago by
jma1991
▴ 70
2
votes
4
replies
586
views
Impose minimum restrictions on correlations in SingleR
single cell
R
SingleR
updated 3.0 years ago by
Aaron Lun
★ 28k • written 3.0 years ago by
k.vitting.seerup
▴ 120
1
vote
2
replies
835
views
Error with cell annotation using singleR
SingleR
updated 3.1 years ago by
Steve Lianoglou
13k • written 3.1 years ago by
bony.dekumar
• 0
0
votes
3
replies
2.0k
views
error in (function (classes, fdef, mtable) unable to find an inherited method for function logNormCounts for signature Seurat
seurat
singleR
updated 3.2 years ago by
Gordon Smyth
47k • written 3.2 years ago by
mathai.c
• 0
28 results • Page
1 of 1
Recent ...
Replies
Comment: CoGAPS Installation Problem - clang compiler does not support '-march=native'
by
MayerAdam
• 0
I just installed the package. The compilation did not fail this time! There appears to be a few minor errors during the installation: 1. C…
Comment: CoGAPS Installation Problem - clang compiler does not support '-march=native'
by
MayerAdam
• 0
Thanks for the reply! My apologies for the very late response. MacOS Version: 12.5 Xcode tools version: 14.0.0 (This is the same as clang …
Answer: Subread installation on Linux ARM64
by
Yang Liao
▴ 350
The Subread and Rsubread packages only support the x86_64 architecture so far.
Comment: Samtools markdup in Rsamtools
by
Martin Morgan
25k
For completeness, an initial answer on a [GitHub issue on the same topic][1]. [1]: https://github.com/Bioconductor/Rsamtools/issues/51
Answer: nullranges
by
Michael Love
39k
Thanks for posting here. So you want to move the small RNA loci around the genome? Do they tend to cluster? For mouse or human genom…
Votes
Comment: CoGAPS Installation Problem - clang compiler does not support '-march=native'
Comment: CoGAPS Installation Problem - clang compiler does not support '-march=native'
Comment: Sva and batch effect
Answer: Sva and batch effect
Answer: Sva and batch effect
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Bogdan
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Ryan
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Guido Hooiveld
★ 3.5k
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