Showing : software error • reset
3
votes
3
replies
3.8k
views
maftools: Error in validateMaf(maf = maf, isTCGA = isTCGA, rdup = removeDuplicatedVariants, : missing required fields from MAF: Chromosome
software error maftools tcgabiolinks
updated 12 months ago by ▴ 200 • written 7.4 years ago by ▴ 100
0
votes
2
replies
2.1k
views
Error in validObject(.Object) : invalid class "CompressedGRangesList" object
software error
updated 3.0 years ago by • 0 • written 5.4 years ago by • 0
8
votes
8
replies
3.3k
views
msa compilation failure - multiple definition of `GC_jmp_buf' in gc-7.2
software error msa
updated 3.4 years ago by ▴ 300 • written 4.7 years ago by ▴ 40
2
votes
8
replies
2.9k
views
error in getBM (biomaRt): "error: no such table: metadata"
biomaRt software error
updated 3.7 years ago by ★ 6.6k • written 4.8 years ago by • 0
0
votes
4
replies
7.2k
views
cannot open fasta file, Error in .Call2("new_input_filexp", filepath, PACKAGE = "XVector")
software error
updated 3.9 years ago by • 0 • written 4.9 years ago by • 0
0
votes
2
replies
1.2k
views
DepMap copy number
software error depmap
updated 3.9 years ago by • 0 • written 4.4 years ago by • 0
4
votes
3
replies
24k
views
Unable to install nloptr
software error
updated 4.0 years ago by ▴ 20 • written 4.5 years ago by • 0
1
vote
2
replies
1.3k
views
How to load the new dataset and gene-sets into singscore package in R
software error
updated 4.2 years ago by • 0 • written 5.4 years ago by • 0
3
votes
4
replies
4.3k
views
ComplexHeatmap installation Error
software error
updated 4.3 years ago by 68k • written 8.0 years ago by ▴ 10
0
votes
3
replies
1.8k
views
Error in Forge the target package (BSgenome)
software error BSgenome
4.5 years ago • updated 4.4 years ago jiazhou0116 • 0
0
votes
4
replies
2.8k
views
Cannot properly finish biomaRt query
software error annotation biomart
updated 4.4 years ago by • 0 • written 4.8 years ago by ▴ 30
0
votes
2
replies
2.8k
views
Error during installation of GEOquery package (R 4.0.3, Bioconduct 3.11)
software error GEOquery
updated 4.4 years ago by 1.6k • written 4.4 years ago by • 0
0
votes
0
replies
964
views
flowCore: gives a "emptyValue" error when / is used as an escape character in .fcs file metadata
software error
4.4 years ago andrea.mcewan • 0
0
votes
1
reply
1.8k
views
Error: Unable to establish connection with R session
software error
updated 4.4 years ago by 1.6k • written 4.4 years ago by • 0
4
votes
5
replies
3.0k
views
how to get exons of multiple genes
software error
4.5 years ago • updated 4.4 years ago pegah.taklifi ▴ 30
0
votes
4
replies
2.1k
views
Error in GSVA: Error in dimnames(x) <- dn
software error
4.4 years ago ElaM • 0
0
votes
4
replies
1.6k
views
Viper error while creating Regulon object from minet adjacency matrix file ?
software error
updated 2.5 years ago by • 0 • written 4.5 years ago by • 0
0
votes
1
reply
1.1k
views
Vignette Run Time
software error
updated 4.5 years ago by 25k • written 4.5 years ago by ▴ 10
3
votes
2
replies
2.3k
views
Failed to install 'MetaboAnalystR' from GitHub
software error MetaboAnalystR mzR
updated 4.5 years ago by 1.6k • written 4.5 years ago by • 0
0
votes
0
replies
917
views
vcountPDict Out-of-Memory Errors
software error Biostrings
4.5 years ago JennyS • 0
1
vote
1
reply
1.3k
views
About generating a seed file (DCF format) for forging a BSgenome
software error BSgenome
updated 4.5 years ago by 16k • written 4.5 years ago by • 0
0
votes
4
replies
4.6k
views
DESeq2 installation in R
software error
updated 4.5 years ago by 25k • written 4.5 years ago by • 0
1
vote
1
reply
1.6k
views
Error with view.molecule.2d function in rcdk
software error rcdk view.molecule.2d ViewMolecule2DTable
updated 4.5 years ago by ★ 4.0k • written 4.5 years ago by • 0
0
votes
2
replies
1.8k
views
Error in installing org.Hs.eg.db
software error org.Hs.eg.db win10
updated 4.5 years ago by 25k • written 4.5 years ago by • 0
3
votes
12
replies
3.4k
views
DESeq2 Installation Errors
deseq2 software error
updated 2.6 years ago by • 0 • written 4.5 years ago by • 0
0
votes
2
replies
1.7k
views
Error in installing ChemmineOB
software error ChemmineOB rand.h macOS
updated 4.5 years ago by ▴ 10 • written 4.5 years ago by • 0
1
vote
2
replies
1.1k
views
error in forgeBSgenomeDataPkg
software error
updated 4.5 years ago by 68k • written 4.5 years ago by • 0
2
votes
3
replies
1.4k
views
Error in topGO analysis
software error topGO go
updated 4.6 years ago by ★ 4.0k • written 4.6 years ago by • 0
0
votes
3
replies
1.5k
views
Use xcms but mzR occurs error
software error xcms
updated 4.6 years ago by ★ 4.0k • written 4.6 years ago by • 0
2
votes
2
replies
2.2k
views
BiocParallel : unable to find an inherited method for function 'bplapply' for signature '"integer", "call"'
software error
updated 4.6 years ago by 25k • written 4.6 years ago by ▴ 140
0
votes
4
replies
1.9k
views
Error with xcms - requiring MSnbase 2.15.3 but not installing
software error xcms MSnbase
updated 4.6 years ago by 1.6k • written 4.6 years ago by • 0
7
votes
2
replies
5.6k
views
Help in installing certain pacakges
software error install
updated 4.6 years ago by 25k • written 4.6 years ago by ▴ 50
0
votes
3
replies
1.8k
views
Unable to install ffbase
software error
updated 4.6 years ago by 25k • written 4.6 years ago by • 0
5
votes
4
replies
2.6k
views
DESeq2 question about use of DESeqDataSetFromTximport() from RSEM data
deseq2 software error
updated 4.7 years ago by 43k • written 4.7 years ago by ▴ 10
1
vote
6
replies
3.8k
views
DEP package: Problems installing on macOS
software error DEP proteomics
updated 4.7 years ago by 1.6k • written 4.7 years ago by • 0
0
votes
0
replies
740
views
Dispersions Error in DEXSEQ
software error
4.7 years ago huck.thornton ▴ 10
0
votes
3
replies
1.8k
views
Cant update old packages
software error packages update
updated 4.7 years ago by 68k • written 4.7 years ago by • 0
4
votes
5
replies
1.9k
views
Installing DESeq2 fails ; R can't find basic commands like 'rm' and 'mv'
deseq2 install software error
4.7 years ago mja18 ▴ 40
0
votes
0
replies
811
views
makeBSseqData problem versions
software error
updated 4.7 years ago by 4.1k • written 4.7 years ago by • 0
0
votes
0
replies
1.7k
views
In serialize(data, node$con)
software error
4.7 years ago thomas.boegl • 0
1
vote
4
replies
2.0k
views
Question: org.Hs.eg.db can not be downloaded
software error
4.7 years ago liuzhizheng1996 • 0
0
votes
0
replies
829
views
Error in data.frame(ASSIGN = "ASSIGN parameters", version = as.character(utils::packageVersion("ASSIGN")), : arguments imply differing number of …
software error assign
4.7 years ago yueli7 ▴ 20
1
vote
7
replies
1.7k
views
Question:Error installing BiocManager::install("org.Hs.eg.db") package.
software error
updated 4.7 years ago by ★ 4.0k • written 4.7 years ago by • 0
6
votes
5
replies
1.2k
views
Security process for Bioconductor
software error
updated 4.7 years ago by 25k • written 4.7 years ago by ▴ 30
0
votes
2
replies
25k
views
Installing EnhancedVolcano package in R
microarray software error
updated 4.7 years ago by ★ 4.0k • written 4.7 years ago by • 0
0
votes
4
replies
5.3k
views
ggplot2 of PCA
software error ggplot2
updated 4.7 years ago by • 0 • written 4.8 years ago by ▴ 20
4
votes
4
replies
7.8k
views
plotPCA in DESeq2
software error deseq2
4.8 years ago yueli7 ▴ 20
5
votes
11
replies
2.1k
views
Rsubread: change in behavior when accepting mixed paired end and single end files
software error Rsubread
updated 4.8 years ago by 52k • written 4.8 years ago by • 0
2
votes
20
replies
3.5k
views
plotPCA in DESeq2
software error deseq2
4.8 years ago yueli7 ▴ 20
2
votes
2
replies
1.3k
views
biomart webservice error when using data from Phytozome
software error go
4.8 years ago e.lopez-cortegano • 0
50 results • Page 1 of 1
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Comment: DESEQ2 looking at main effects while controlling for a continuous variable by James W. MacDonald 68k
The covariate is accounted for when you fit the model, so you don't need to do anything with it at the contrast step. You don't need a con…
Comment: DESEQ2 looking at main effects while controlling for a continuous variable by Lennie • 0
Thank you so much for taking the time and for the detailed explanation! I was wondering, in your numeric contrast of c(1, -1, 0,0,0), doe…
Answer: DESEQ2 looking at main effects while controlling for a continuous variable by James W. MacDonald 68k
If you use a factor effects model (with an intercept), then you will have a baseline group (the intercept), and all other coefficients exce…
Comment: Issue with DECIPHER::IdTaxa by Daniel • 0
The issue is still there and it is a real pain. ape and ade4 are used by packages like Phyloseq. There should be a way to avoid these inc…
Comment: Using edgeR::voomLmFit for the analysis of paired clinical RNA-seq samples with by Gordon Smyth 52k
I generally recommend `block=individual` for unbalanced designs, to recover information from incomplete blocks. I would only be disuaded fr…
Votes
Answer: DESEQ2 looking at main effects while controlling for a continuous variable
Use of clusterProfiler : Error in testForValidKeytype(x, keytype)
Comment: Using edgeR::voomLmFit for the analysis of paired clinical RNA-seq samples with
Answer: Using edgeR::voomLmFit for the analysis of paired clinical RNA-seq samples with
Answer: Using edgeR::voomLmFit for the analysis of paired clinical RNA-seq samples with
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