Showing : stringdb • reset
4
votes
9
replies
2.1k
views
Get_interactions is giving the combined score
STRINGdb
updated 16 months ago by • 0 • written 17 months ago by ▴ 20
0
votes
3
replies
894
views
STRINGdb server response time for mapping
mapping serverresponsetime STRINGdb
updated 18 months ago by ▴ 110 • written 18 months ago by • 0
1
vote
3
replies
946
views
STRINGdb v.2.16.4 does not render the plot [libpng error: Not a PNG file]
STRINGdb
updated 18 months ago by ▴ 110 • written 18 months ago by • 0
0
votes
3
replies
1.4k
views
STRINGdb : error with string_db$plot_network()
STRINGdb
updated 19 months ago by ▴ 110 • written 19 months ago by • 0
0
votes
6
replies
2.4k
views
StringDB: Cannot finish their tutorial because of an error
STRINGdb
updated 21 months ago by • 0 • written 21 months ago by • 0
0
votes
2
replies
1.2k
views
StringDB: Cannot use payload mechanism to colour nodes
RNASeqData STRINGdb DifferentialExpression GraphAndNetwork Network
2.0 years ago Luca • 0
2
votes
5
replies
4.1k
views
STRINGdb R package reference class instantiation with v12.0
STRINGdb
updated 20 months ago by ▴ 110 • written 2.1 years ago by • 0
0
votes
1
reply
792
views
Specifying evidence channels in STRINGdb
STRINGdb stringdb
2.2 years ago robynne.braun • 0
0
votes
7
replies
2.5k
views
Cannot open URL for StringDB protein.links.v11.5/9606.protein.links.v11.5.txt.gz
STRINGdb
updated 2.3 years ago by ▴ 110 • written 2.3 years ago by • 0
0
votes
0
replies
1.2k
views
Issues setting background in STRINGdb
STRINGdb MSstats
2.5 years ago samsiljee • 0
2
votes
2
replies
2.5k
views
STRINGdb offline use (via input_directory argument)
STRINGdb
2.8 years ago Charlotte Soneson ▴ 170
2
votes
3
replies
1.6k
views
Potential bug in STRINGdb$get_aliases()
STRINGdb
3.6 years ago AstrobioMike • 0
1
vote
2
replies
1.8k
views
Filter proteins with known interactions from STRINGdb R package
STRINGdb
3.7 years ago Abhishek • 0
2
votes
4
replies
3.1k
views
STRINGdb string_db$map error
STRINGdb HELP
updated 2.8 years ago by ▴ 10 • written 3.8 years ago by ▴ 10
0
votes
6
replies
3.4k
views
STRINGdb : error with string_db$plot_network()
STRINGdb
3.9 years ago • updated 3.8 years ago Wolfgang RAFFELSBERGER ▴ 140
2
votes
9
replies
3.5k
views
STRINGdb images very low quality?
STRINGdb
updated 3.9 years ago by ▴ 110 • written 4.0 years ago by ▴ 30
3
votes
4
replies
3.7k
views
STRINGdb: Error in download.file(urlStr, temp)
STRINGdb R
updated 3.9 years ago by ▴ 110 • written 4.1 years ago by ▴ 10
0
votes
3
replies
2.2k
views
STRINGdb : accessing all types of (sub-)scores from interactions
STRINGdb
updated 4.3 years ago by ▴ 110 • written 4.3 years ago by ▴ 140
0
votes
1
reply
1.4k
views
Error in mapping the gene names to the STRINGdb identifiers
PPI STRINGdb
updated 4.3 years ago by ▴ 110 • written 4.3 years ago by ▴ 10
0
votes
0
replies
1.5k
views
R: STRINGdb, from get_enrichment() function how to get background gene list that are related to pathways?
R STRINGdb
4.5 years ago choijamts • 0
0
votes
1
reply
3.2k
views
Network analysis: Is low confidence score valid (STRING DB)
STRINGdb Network
updated 4.5 years ago by ★ 4.0k • written 4.5 years ago by • 0
1
vote
1
reply
1.5k
views
How to find the source code of the package STRINGdb ?
STRINGdb Bioconductor
updated 4.8 years ago by 4.2k • written 4.8 years ago by ▴ 10
0
votes
1
reply
1.2k
views
How can I download all supported species information table of STRINGdb V11
STRINGdb STRING
updated 5.1 years ago by 6.7k • written 5.1 years ago by • 0
0
votes
15
replies
3.7k
views
Is the STRINGdb server down?
STRINGdb R protein
updated 6.5 years ago by • 0 • written 6.7 years ago by • 0
2
votes
4
replies
2.3k
views
Can't create STRINGdb v11 object using STRINGdb packages methods
stringdb
6.6 years ago Moosa • 0
0
votes
2
replies
1.9k
views
STRING_id mismatch with STRINGdb
STRINGdb igraph
6.7 years ago Samuel Lee • 0
0
votes
1
reply
1.5k
views
STRINGdb: enrichment function raises error
STRINGdb stringdb gene set enrichment analysis software error go
7.1 years ago wsciekly.maciek ▴ 10
0
votes
1
reply
1.3k
views
error with STRINGdb package to download the graph
stringdb R
7.5 years ago Salvo88 ▴ 20
0
votes
1
reply
1.7k
views
How to download All Protein Protein Interactions of an organism with Bioconductor
ppi stringdb mus musculus
updated 7.7 years ago by ▴ 110 • written 7.7 years ago by ▴ 20
0
votes
4
replies
1.9k
views
problem with get_link function
STRINGdb get_link bug
7.9 years ago cristinapasi • 0
0
votes
0
replies
1.4k
views
Problem with link generated with R using the string_db$get_link
stringdb
8.6 years ago Ilario De Toma ▴ 10
0
votes
3
replies
3.1k
views
unable to connect to 'string.uzh.ch' on port 80
STRINGdb vignette
updated 8.6 years ago by ▴ 10 • written 8.6 years ago by • 0
1
vote
2
replies
1.9k
views
string-db.org link not working in generated graphic
STRINGdb
9.1 years ago • updated 8.9 years ago florian.reisinger • 0
0
votes
1
reply
2.1k
views
Plotting protein-protein interaction enrichment with STRINGdb
stringdb error
9.2 years ago Lluís Revilla Sancho ▴ 760
1
vote
2
replies
2.4k
views
How to export a STRINGDB network to XML
STRINGdb
updated 10.6 years ago by ▴ 10 • written 10.6 years ago by ▴ 160
35 results • Page 1 of 1
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Comment: Bioinformatician at the Lausanne University Hospital by eja.ger.m • 0
For individuals looking to improve communication and collaboration in demanding medical or research environments like the Genetic Medicine …
Answer: NUPOP usage by shepherl 4.2k
You should read the documentation in the package especially the package vignette https://bioconductor.org/packages/release/bioc/html/NuPoP.…
Comment: How can I correctly use phyloseq with Docker? by fnfgame • 0
In a rocker image, this error usually means the Bioconductor install happened as root but the runtime library paths used by the shiny user …
Comment: DECIPHER DesignProbes unable to design FISH-probes by Erik Wright ▴ 150
Are the sequences aligned (i.e., the same width) before running `TileSeqs()`?
Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment by Michael Love 43k
BTW, I tested with no issue on MacOS ARM on our previous github issue.
Votes
C: DESeq2 Following RSEM
Upcoming Ensembl API and data access changes - new blog post available
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Large logFC but somewhat high FDR
Comment: upstream git branches of bioc-release
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