Bioconductor Svaseq

Showing : svaseq • reset

votes

replies

485

views

DESeq2 Normalisation Bulkrnaseq Svaseq

6 months ago BioinfGuru ▴ 70

votes

846

views

RUVSeq svaseq

2.4 years ago Tongjun • 0

votes

replies

1.3k

views

RNASeq sva svaseq

updated 2.9 years ago by James W. MacDonald 67k • written 2.9 years ago by Bex • 0

votes

replies

976

views

limma sva Leafcutter SVAseq

3.2 years ago georgia.katsoula ▴ 40

votes

957

views

sva svaseq surrogate variable analysis

updated 4.7 years ago by James W. MacDonald 67k • written 4.7 years ago by Mozart ▴ 30

vote

1.1k

views

svaseq sva

5.7 years ago flippy23 • 0

vote

1.0k

views

MEDIPS svaseq sva

updated 5.9 years ago by Lukas Chavez ▴ 570 • written 5.9 years ago by tofukaj • 0

votes

replies

1.9k

views

deseq2 svaseq

5.9 years ago bioinfo • 0

votes

replies

1.8k

views

edger sva svaseq limma

updated 6.6 years ago by Ryan C. Thompson ★ 7.9k • written 6.6 years ago by cats_dogs ▴ 20

vote

replies

3.6k

views

DESeq2 sva svaseq batch effect correction

6.9 years ago L_K • 0

votes

replies

1.3k

views

svaseq batcheffectcorrection

7.1 years ago burcu.atasu • 0

vote

1.7k

views

ruvseq svaseq edaseq

updated 7.1 years ago by davide risso ▴ 980 • written 7.1 years ago by llo ▴ 10

votes

replies

1.4k

views

sva svaseq batch effect batch effects batch effect correction

7.4 years ago vedran.franke • 0

vote

replies

1.9k

views

deseq2 svaseq

updated 7.4 years ago by Michael Love 43k • written 7.4 years ago by gpalidwor ▴ 10

votes

replies

2.0k

views

sva svaseq

updated 7.5 years ago by Guido Hooiveld ★ 4.1k • written 7.5 years ago by wamiqsaifi • 0

votes

replies

2.7k

views

limma sva svaseq

updated 7.8 years ago by Aaron Lun ★ 28k • written 7.8 years ago by Bogdan ▴ 670

votes

replies

2.0k

views

svaseq dexseq

updated 7.9 years ago by Alejandro Reyes ★ 1.9k • written 7.9 years ago by tofukaj • 0

votes

replies

2.8k

views

svaseq combat sva RANseq batcheffect removebatcheffect

updated 8.2 years ago by Jakub ▴ 50 • written 8.2 years ago by amoltej ▴ 10

votes

replies

5.8k

views

deseq2 svaseq

8.2 years ago Akula, Nirmala NIH/NIMH [C] ▴ 190

votes

2.0k

views

deseq2 sva svaseq

updated 8.3 years ago by Michael Love 43k • written 8.3 years ago by szenitha ▴ 20

votes

replies

2.8k

views

sva svaseq batcheffectcorrection

updated 8.4 years ago by Jeff Leek ▴ 650 • written 8.4 years ago by szenitha ▴ 20

vote

replies

4.0k

views

deseq2 sva svaseq pca

8.5 years ago Peter Alto ▴ 10

22 results • Page 1 of 1

Recent ...

Replies

Answer: Cross-validation with multiple control subgroups in limma by Gordon Smyth 52k

limma doesn't do cross-validation or resampling. Like most classical linear modeling procedures in statistics, limma uses a statistical mod…

Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio by Robert Castelo ★ 3.4k

Hi Hervé, thank you very much for your input into how to properly build and manage TxDb objects. gDNAx has two main inputs, one or more BAM…

Comment: Biostrings: Error writing long reads (>200 kbps) with writeQualityScaledXStringS by Aidan ▴ 60

Quick update: this is fixed in a branch awaiting PR to Biostrings (https://github.com/Bioconductor/Biostrings/pull/122). Should be in `deve…

Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings? by Michael Love 43k

For statistical analysis plans, I recommend working with a local statistician or someone familiar with linear models in R. I have to reserv…

Comment: how should I apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K? by xiaofeiwang198266 • 0

Thanks for your reply!

Votes

C: edgeR and lack of counts ID on CPM matrix

A: DESeq2 Following RSEM

A: importing RSEM data into DESeq2

A: Expected counts from RSEM in DESeq2

A: Using RSEM reads for DESeq2

Awards • All