Bioconductor Svaseq

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866

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DESeq2 Normalisation Bulkrnaseq Svaseq

16 months ago BioinfGuru ▴ 70

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1.1k

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RUVSeq svaseq

3.3 years ago Tongjun • 0

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1.5k

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RNASeq sva svaseq

updated 3.8 years ago by James W. MacDonald 68k • written 3.8 years ago by Bex • 0

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1.2k

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limma sva Leafcutter SVAseq

4.1 years ago georgia.katsoula ▴ 40

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1.1k

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sva svaseq surrogate variable analysis

updated 5.5 years ago by James W. MacDonald 68k • written 5.5 years ago by Mozart ▴ 30

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1.3k

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svaseq sva

6.6 years ago flippy23 • 0

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1.2k

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MEDIPS svaseq sva

updated 6.7 years ago by Lukas Chavez ▴ 570 • written 6.7 years ago by tofukaj • 0

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2.3k

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deseq2 svaseq

6.7 years ago bioinfo • 0

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2.1k

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edger sva svaseq limma

updated 7.4 years ago by Ryan C. Thompson ★ 7.9k • written 7.4 years ago by cats_dogs ▴ 20

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4.1k

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DESeq2 sva svaseq batch effect correction

7.7 years ago L_K • 0

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1.4k

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svaseq batcheffectcorrection

7.9 years ago burcu.atasu • 0

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2.0k

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ruvseq svaseq edaseq

updated 8.0 years ago by davide risso ▴ 980 • written 8.0 years ago by llo ▴ 10

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1.6k

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sva svaseq batch effect batch effects batch effect correction

8.2 years ago vedran.franke • 0

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2.2k

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deseq2 svaseq

updated 8.2 years ago by Michael Love 43k • written 8.2 years ago by gpalidwor ▴ 10

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2.3k

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sva svaseq

updated 8.3 years ago by Guido Hooiveld ★ 4.1k • written 8.4 years ago by wamiqsaifi • 0

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2.9k

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limma sva svaseq

updated 8.7 years ago by Aaron Lun ★ 29k • written 8.7 years ago by Bogdan ▴ 670

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2.3k

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svaseq dexseq

updated 8.7 years ago by Alejandro Reyes ★ 1.9k • written 8.7 years ago by tofukaj • 0

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3.3k

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svaseq combat sva RANseq batcheffect removebatcheffect

updated 9.0 years ago by Jakub ▴ 50 • written 9.0 years ago by amoltej ▴ 10

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6.5k

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deseq2 svaseq

9.0 years ago Akula, Nirmala NIH/NIMH [C] ▴ 190

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2.3k

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deseq2 sva svaseq

updated 9.2 years ago by Michael Love 43k • written 9.2 years ago by szenitha ▴ 20

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3.1k

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sva svaseq batcheffectcorrection

updated 9.2 years ago by Jeff Leek ▴ 650 • written 9.2 years ago by szenitha ▴ 20

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4.3k

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deseq2 sva svaseq pca

9.4 years ago Peter Alto ▴ 20

22 results • Page 1 of 1

Recent ...

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Comment: Announcing GBCC 2025: The first-ever joint conference between Bioconductor and G by dzv20413 • 0

Wow, GBCC 2025 sounds amazing, can not wait to see the logo contest results! Also, I just played [Level Devil][1] and it is super addictive…

Comment: Memory error while running alignments by Erik Wright ▴ 150

How much memory is available on the computer? A distance matrix of 50k sequences requires at least 50k*50k/2 * 8 bytes = 10GB, assuming the…

Comment: NA values for DESeq2 p-values and adjusted p-values using large sample sizes by Gabriel • 0

Thank you very much for the reply. However, none of these three options seems to fit: 1) The genes for which NA appears do not have all 0 …

Comment: "organism" missing in BSgenome.Hsapiens.UCSC.hg38 slotNames by ubjw24 • 0

Thank you for your replies. I got the problem solved by installing mutSignature with this line: ``` devtools::install_github("dami82/mutS…

Comment: DESeq2 design for haplotype MPRA by Rita • 0

Thank you very much, I appreciate it!

Votes

Comment: Check removeBatchEffect effectiveness

Comment: Streamlining the computing time for MiloDE p-value correction in large dataset?

Answer: DESeq2 design for haplotype MPRA

A: Different logFC (log2foldchange) values for genes from limma-voom and other too

Comment: Check removeBatchEffect effectiveness

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