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update
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reset
8
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4
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6.9k
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Can't upgrade to Bioconductor 3.3?
bioconductor
biocupgrade
upgrade
update
bioclite
8.0 years ago
enricoferrero
▴ 660
1
vote
2
replies
6.5k
views
Can't update DESeq2 to most updated version
deseq2
update
9.3 years ago
zshao1
• 0
5
votes
4
replies
5.5k
views
Problem using BiocUpgrade
update
bioclite
updated 9.5 years ago by
Dan Tenenbaum
★ 8.2k • written 9.5 years ago by
dianmante
• 0
1
vote
5
replies
3.0k
views
Updating Out of Date BiocManager Packages
biocmanager
valid
update
packages
updated 4.0 years ago by
Kevin Blighe
★ 3.9k • written 4.0 years ago by
bs14ab
• 0
1
vote
3
replies
2.0k
views
update all/some/none how to set default to "update all"
biocLite
update
all
default
ask
updated 5.2 years ago by
Fischer-philipp
▴ 30 • written 5.2 years ago by
rgiannico
▴ 10
0
votes
2
replies
2.0k
views
Having trouble updating Bioconductor
installation
update
updated 7.2 years ago by
James W. MacDonald
65k • written 7.2 years ago by
debg
• 0
1
vote
3
replies
1.5k
views
How to update the data in an experimental data package
experimentdata
update
updated 9.6 years ago by
Laurent Gatto
1.6k • written 9.6 years ago by
paul.theodor.pyl
▴ 10
0
votes
3
replies
1.3k
views
Cant update old packages
software error
packages
update
updated 3.8 years ago by
James W. MacDonald
65k • written 3.8 years ago by
bs14ab
• 0
0
votes
4
replies
1.2k
views
Difficulties updating a package on Bioconductor
update
Omixer
maintainer
updated 3.4 years ago by
shepherl
3.8k • written 3.4 years ago by
l.j.sinke
• 0
0
votes
1
reply
1.1k
views
PANTHER.db update to the last version of PANTHERdb database?
PANTHER.db
update
annotation
go
updated 5.2 years ago by
Martin Morgan
25k • written 5.2 years ago by
alfonsosaera
• 0
0
votes
0
replies
873
views
HowTo: install just html help on top of existing packages
bioclite
package installation
update
7.1 years ago
Malcolm Cook
★ 1.6k
3
votes
0
replies
789
views
News:
Support Site Updates
support.bioconductor.org
update
News
5.3 years ago
shepherl
3.8k
0
votes
2
replies
656
views
New release or do I submit as a new package if package update includes a new function
update
new release
version
4.6 years ago
zzrickli
• 0
0
votes
1
reply
485
views
Updated package is not the version specified on the homepage
Versions
Update
BindingSiteFinder
updated 15 months ago by
Mike Smith
★ 6.5k • written 15 months ago by
M.Klostermann
• 0
14 results • Page
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Answer: PCA plot suggestions
by
Michael Love
41k
For help with interpretation and design of analysis, I recommend working with a local statistician. Due to time restrictions, I can only…
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
by
ussarizona
▴ 10
Hi Michael, Yes, I could figure it out what does the error mean. In my matrix I had the first colum GeneID while in my condition I only h…
Answer: Deseq2. decontXcounts not integers. Useful alternative?
by
Michael Love
41k
Another option would be to put the per sample estimated contamination in the design. This is for example how RUV etc help remove spurious D…
Answer: ATACseq merge peaks
by
ATpoint
★ 4.0k
That depends on your analysis. Typically, for differential analysis (and convenience) you would produce a single set of peaks (e.g. by merg…
Comment: Deseq2. decontXcounts not integers. Useful alternative?
by
camp
▴ 10
Yes, @atpoint is correct. decontX decontaminated counts are not integers due to the way the variation inference algorithm works, but you ca…
Votes
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
Comment: Deseq2. decontXcounts not integers. Useful alternative?
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
biomaRt error: database disk image is malformed
Comment: biomaRt : No lock file for BiocFileCache
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