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trying to add SingleR label to Seurat Object fails
SingleR Seurat
updated 5 months ago by ★ 4.1k • written 5 months ago by ★ 1.5k
1
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1
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779
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Answer: Answer: trying to add SingleR label to Seurat Object fails
5 months ago Assa Yeroslaviz ★ 1.5k
0
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0
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2.8k
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Comment: Comment: How to use "p-value" instead of "p-adj value" in DESeq2
6 months ago Assa Yeroslaviz ★ 1.5k
2
votes
2
replies
5.5k
views
scran ScoreMarkers throws a warning
scoreMarkers scran
updated 10 months ago by ▴ 740 • written 10 months ago by ★ 1.5k
0
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0
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717
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Comment: Comment: Scaling and normalization by deconvolution of SMART-Seq 2 data
13 months ago Assa Yeroslaviz ★ 1.5k
0
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2
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717
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Scaling and normalization by deconvolution of SMART-Seq 2 data
scran Clustering SingleCell Normalization
13 months ago Assa Yeroslaviz ★ 1.5k
0
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0
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869
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Comment: Comment: Can I run DESeq2 with SMART-Seq data
13 months ago Assa Yeroslaviz ★ 1.5k
0
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0
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869
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Comment: Comment: Can I run DESeq2 with SMART-Seq data
13 months ago Assa Yeroslaviz ★ 1.5k
4
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4
replies
869
views
Can I run DESeq2 with SMART-Seq data
DESeq2 SMART-seq
13 months ago Assa Yeroslaviz ★ 1.5k
0
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2
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1.1k
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Comment: Comment: different number of DEG because of outliers
13 months ago Assa Yeroslaviz ★ 1.5k
0
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0
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1.1k
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Answer: Answer: output file conversion from FeatureCount to DESeq2 - no duplicate for samples
20 months ago Assa Yeroslaviz ★ 1.5k
0
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1
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19k
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Comment: Comment: DESeq2: add annotations (from data frame) to DESeqDataSet
2.2 years ago Assa Yeroslaviz ★ 1.5k
0
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0
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1.5k
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Comment: Comment: Differential Splicing using edgeR
2.3 years ago Assa Yeroslaviz ★ 1.5k
0
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1
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1.5k
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Comment: Comment: Differential Splicing using edgeR
2.3 years ago Assa Yeroslaviz ★ 1.5k
1
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4
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1.5k
views
Differential Splicing using edgeR
diffSpliceDGE edgeR DifferentialSplicing
2.3 years ago Assa Yeroslaviz ★ 1.5k
0
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0
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2.3k
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Comment: Comment: How to use subjunc for differential splicing analysis?
2.3 years ago Assa Yeroslaviz ★ 1.5k
0
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0
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2.3k
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Comment: Comment: How to use subjunc for differential splicing analysis?
2.3 years ago Assa Yeroslaviz ★ 1.5k
0
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2
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2.3k
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Comment: Comment: How to use subjunc for differential splicing analysis?
2.3 years ago Assa Yeroslaviz ★ 1.5k
3
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6
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2.3k
views
How to use subjunc for differential splicing analysis?
subjunc edgeR
2.3 years ago Assa Yeroslaviz ★ 1.5k
0
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0
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854
views
Comment: Comment: catchKallisto results are not counts
2.3 years ago Assa Yeroslaviz ★ 1.5k
2
votes
2
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854
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catchKallisto results are not counts
DifferentialSplicingWorkflow catchKallisto edgeR DifferentialSplicing
2.3 years ago Assa Yeroslaviz ★ 1.5k
1
vote
2
replies
929
views
How to apply a function to a RleViesList object?
Views IRanges GRanges RleList
updated 2.6 years ago by ★ 6.5k • written 2.6 years ago by ★ 1.5k
1
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0
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2.1k
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Comment: Comment: Complex Heatmap shows just one color
3.0 years ago Assa Yeroslaviz ★ 1.5k
3
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2
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2.1k
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Complex Heatmap shows just one color
Heatmap ComplexHeatmap colorRamp
3.1 years ago • updated 3.0 years ago Assa Yeroslaviz ★ 1.5k
7
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8
replies
6.5k
views
Warning in EnhancedVolcano plot
volcano-plot EnhancedVolcano
updated 3.0 years ago by ★ 3.9k • written 3.1 years ago by ★ 1.5k
0
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2
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1.5k
views
Using edgeR to analyze Cripsr/Cas9 Screening data
edger processamplicons sgrna crispr
updated 14 months ago by • 0 • written 6.1 years ago by ★ 1.5k
2
votes
3
replies
1.9k
views
lfcshrink() with no coef in resultsNames()
lfcshrink coef DESeq2
updated 2.5 years ago by 41k • written 3.5 years ago by ★ 1.5k
0
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0
replies
676
views
contradicting behavior after in low-dimensional representation with zinbwave
zinbwave PCA
3.6 years ago Assa Yeroslaviz ★ 1.5k
0
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0
replies
1.7k
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Comment: C: How to work with duplicates calculating the differentially expressed genes in Ps
3.6 years ago Assa Yeroslaviz ★ 1.5k
1
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4
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1.7k
views
How to work with duplicates calculating the differentially expressed genes in PseudoBulk-singleCell RNA experiment using zinbwave?
scRNA zinbwave batch IntegratedData
updated 3.6 years ago by ▴ 950 • written 3.6 years ago by ★ 1.5k
0
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1
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1.7k
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Comment: C: How to work with duplicates?
3.6 years ago Assa Yeroslaviz ★ 1.5k
0
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0
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1.7k
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Comment: C: How to work with duplicates?
3.6 years ago Assa Yeroslaviz ★ 1.5k
1
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1
reply
7.2k
views
Comment: C: Plot PCA with ellipses
4.0 years ago Assa Yeroslaviz ★ 1.5k
0
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1
reply
1.6k
views
ChIPSeeker with Ensembl IDs
chipseeker Ensembl EnsDb.Mmusculus.v79 ensembldb
4.1 years ago Assa Yeroslaviz ★ 1.5k
0
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0
replies
780
views
plotting Signalling Pathways using SPIA
SPIA functional-analysis Pathways KEGG
4.1 years ago Assa Yeroslaviz ★ 1.5k
1
vote
1
reply
25k
views
lfcShrink doesn't work with contrasts
lfcShrink contrast design deseq2
updated 4.3 years ago by 41k • written 4.3 years ago by ★ 1.5k
1
vote
3
replies
772
views
typo in rnaseqGene workflow vignette.
rnaseqGene workflow deseq2
updated 4.3 years ago by 41k • written 4.3 years ago by ★ 1.5k
2
votes
1
reply
1.3k
views
combining columns for experimental design in DESeq2
deseq2 design metadata
updated 4.3 years ago by ▴ 50 • written 4.3 years ago by ★ 1.5k
0
votes
3
replies
1000
views
How to apply a linear mixed model onto an RNA-Seq data?
limma linear mixed model voom rna-seq
4.7 years ago Assa Yeroslaviz ★ 1.5k
0
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0
replies
4.4k
views
Answer: A: Plot ggplot2 and ggbio Images Together
4.8 years ago Assa Yeroslaviz ★ 1.5k
0
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1
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1.1k
views
Comment: C: BioMart webservices broken?
4.8 years ago Assa Yeroslaviz ★ 1.5k
0
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0
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1.4k
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Comment: C: Plot genes with similar expression patterns
5.0 years ago Assa Yeroslaviz ★ 1.5k
0
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0
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2.8k
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Comment: C: Time-series analysis with DESeq2
5.2 years ago Assa Yeroslaviz ★ 1.5k
0
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1
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2.8k
views
Comment: C: Time-series analysis with DESeq2
5.2 years ago Assa Yeroslaviz ★ 1.5k
0
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1
reply
2.8k
views
Comment: C: Time-series analysis with DESeq2
5.2 years ago Assa Yeroslaviz ★ 1.5k
0
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0
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2.8k
views
Comment: C: Time-series analysis with DESeq2
5.2 years ago Assa Yeroslaviz ★ 1.5k
0
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0
replies
2.8k
views
Comment: C: Time-series analysis with DESeq2
5.2 years ago Assa Yeroslaviz ★ 1.5k
0
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1
reply
838
views
Comment: C: clarification of time-series analysis
5.2 years ago Assa Yeroslaviz ★ 1.5k
3
votes
3
replies
838
views
clarification of time-series analysis
deseq2 baseline LRT
updated 5.2 years ago by 41k • written 5.2 years ago by ★ 1.5k
0
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1
reply
2.8k
views
Comment: C: Time-series analysis with DESeq2
5.2 years ago Assa Yeroslaviz ★ 1.5k
327 results • Page 1 of 7
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