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Showing :
questions
3
votes
2
replies
1.9k
views
DEXSeq throws a warning - rank-deficient matrix
dexseq
fit
matrix
warning
updated 2.5 years ago by
koushik
• 0 • written 7.3 years ago by
Assa Yeroslaviz
★ 1.5k
2
votes
4
replies
1.3k
views
convert a sequence to Ranges object
iranges
fasta
split
updated 7.3 years ago by
Michael Lawrence
★ 11k • written 7.3 years ago by
Assa Yeroslaviz
★ 1.5k
0
votes
1
reply
1.0k
views
creating PDIct from AAStringSets
PDict
Biostrings
aastring
updated 7.3 years ago by
Hervé Pagès
16k • written 7.3 years ago by
Assa Yeroslaviz
★ 1.5k
2
votes
4
replies
1.3k
views
plotting proteases digestion points in a protein
biostrings
iranges
sequence
alignment
protein
updated 7.3 years ago by
Michael Lawrence
★ 11k • written 7.3 years ago by
Assa Yeroslaviz
★ 1.5k
2
votes
2
replies
3.9k
views
DESeq2 size.factor estimation
deseq2
estimatesizefactors
updated 7.5 years ago by
Steve Lianoglou
★ 13k • written 7.5 years ago by
Assa Yeroslaviz
★ 1.5k
0
votes
5
replies
1.4k
views
Splitting a fasta file based on specific Amino acid for plotting
iranges
biostrings
fasta
protein
readaastringset
updated 7.6 years ago by
Michael Lawrence
★ 11k • written 7.6 years ago by
Assa Yeroslaviz
★ 1.5k
1
vote
1
reply
1.3k
views
expression profiles between DESeq2 and Mfuzz
deseq2
mfuzz
differential expression
timecourse
updated 7.6 years ago by
Michael Love
42k • written 7.6 years ago by
Assa Yeroslaviz
★ 1.5k
1
vote
4
replies
1.4k
views
comparing transcripts expression between conditions
salmon
transcripts
significance
counts
7.9 years ago
Assa Yeroslaviz
★ 1.5k
4
votes
7
replies
1.7k
views
assigning differential exons to trascripts
dexseq
rsem
differential exon usage
differential gene expression
updated 7.9 years ago by
James W. MacDonald
65k • written 7.9 years ago by
Assa Yeroslaviz
★ 1.5k
0
votes
1
reply
1.3k
views
interpreting dispersion estimation in dexseq
deseq2
dexseq
estimatedispersions
updated 8.0 years ago by
Wolfgang Huber
★ 13k • written 8.0 years ago by
Assa Yeroslaviz
★ 1.5k
1
vote
3
replies
1.6k
views
DEXSeq warnings for millions of reads
DEXSeq
warnings
dexseq_count
updated 8.1 years ago by
Darya Vanichkina
▴ 120 • written 8.1 years ago by
Assa Yeroslaviz
★ 1.5k
1
vote
1
reply
1.1k
views
DESeq2 analysis with multiple biological parameters
deseq2
dexseq
multiple factor design
multifactorial design
updated 8.2 years ago by
Michael Love
42k • written 8.2 years ago by
Assa Yeroslaviz
★ 1.5k
4
votes
3
replies
6.9k
views
deseq2 warning for the design formula
deseq2
design
updated 8.3 years ago by
Michael Love
42k • written 8.3 years ago by
Assa Yeroslaviz
★ 1.5k
2
votes
4
replies
1.5k
views
DEXSeqHTML doesn't creates plots
dexseq
DEXSeqHTML
data representation in graphical forms
warning message
8.5 years ago
Assa Yeroslaviz
★ 1.5k
1
vote
4
replies
1.4k
views
DEXSeq Error when calculating Exon Fold-changes
dexseq
logfoldchange
exon usage
8.5 years ago
Assa Yeroslaviz
★ 1.5k
3
votes
2
replies
1.5k
views
biomaRt error when creating a mart object
biomart
updated 8.5 years ago by
Johannes Rainer
★ 2.0k • written 8.5 years ago by
Assa Yeroslaviz
★ 1.5k
0
votes
5
replies
3.3k
views
coefficients meaning in time course analysis with DESeq2
deseq2
timecourse
time course
design and contrast matrix
coefficient of variation
updated 8.5 years ago by
Michael Love
42k • written 8.5 years ago by
Assa Yeroslaviz
★ 1.5k
0
votes
2
replies
1.4k
views
DE genes over time with DESeq2
deseq2
timecourse
design and contrast matrix
updated 10 weeks ago by
ta_awwad
▴ 10 • written 8.5 years ago by
Assa Yeroslaviz
★ 1.5k
4
votes
1
reply
4.7k
views
norm.factors in TMM normalisation
edgr
tmm
normalization
updated 8.6 years ago by
Aaron Lun
★ 28k • written 8.6 years ago by
Assa Yeroslaviz
★ 1.5k
4
votes
2
replies
3.4k
views
select keys from org.Mm.eg.db
org.mm.eg.db
select
list
updated 8.7 years ago by
James W. MacDonald
65k • written 8.7 years ago by
Assa Yeroslaviz
★ 1.5k
0
votes
1
reply
1.2k
views
package or namespace load failed for ‘targetscan.Mm.eg.db’
targetscan
namespace
updated 8.7 years ago by
James W. MacDonald
65k • written 8.7 years ago by
Assa Yeroslaviz
★ 1.5k
0
votes
1
reply
1.0k
views
miRNAtap getPredictedTargets error message
miRNAtap
miRNA target prediction
updated 8.7 years ago by
Maciej
• 0 • written 8.7 years ago by
Assa Yeroslaviz
★ 1.5k
8
votes
9
replies
6.0k
views
could not find symbol "keepNA" in environment of the generic function
R
function
genomicalignments
genomicranges
summarizeoverlaps
updated 8.8 years ago by
Mathilde
• 0 • written 8.9 years ago by
Assa Yeroslaviz
★ 1.5k
0
votes
2
replies
1.4k
views
Diffrential expression analysis of human vs. mouse
deseq2
cuffdiff
differential gene expression
8.9 years ago
Assa Yeroslaviz
★ 1.5k
3
votes
9
replies
5.1k
views
DESeq2 results with RUVSeq values
deseq2
ruvseq
sizefacotrs
updated 9.0 years ago by
davide risso
▴ 950 • written 9.0 years ago by
Assa Yeroslaviz
★ 1.5k
5
votes
4
replies
9.5k
views
DESeq2 produces adjusted p-values = 1
deseq2
adjusted pvalue
updated 9.0 years ago by
Steve Lianoglou
★ 13k • written 9.0 years ago by
Assa Yeroslaviz
★ 1.5k
6
votes
4
replies
2.6k
views
discrepance in DESeq2 results with different design structures
deseq2
differential expression
independent filtering
pre-filtering
design matrix
9.1 years ago
Assa Yeroslaviz
★ 1.5k
0
votes
3
replies
1.3k
views
biomaRt connection error
biomart
rwebservices
9.4 years ago
Assa Yeroslaviz
★ 1.5k
0
votes
2
replies
1.6k
views
ReportingTools problem with GO report
Annotation
GO
Annotation
GO
updated 9.5 years ago by
ankitabioinformatics
• 0 • written 10.1 years ago by
Assa Yeroslaviz
★ 1.5k
0
votes
1
reply
1.4k
views
DEXSeq error: Count files do not correspond to the flattened annotation file
DEXSeq
counts
gff
9.5 years ago
Assa Yeroslaviz
★ 1.5k
0
votes
1
reply
1.6k
views
estimation of size factors in DESeq2 analysis
RNASeq
DESeq
DESeq2
RNASeq
DESeq
DESeq2
updated 9.9 years ago by
Michael Love
42k • written 9.9 years ago by
Assa Yeroslaviz
★ 1.5k
0
votes
5
replies
1.7k
views
ReportingTools error message
DESeq
ReportingTools
DESeq2
DESeq
ReportingTools
DESeq2
9.9 years ago
Assa Yeroslaviz
★ 1.5k
0
votes
0
replies
1.4k
views
mfuzz problems
Clustering
Mfuzz
Clustering
Mfuzz
10.0 years ago
Assa Yeroslaviz
★ 1.5k
0
votes
9
replies
2.6k
views
ReportingTools gene IDs
convert
convert
updated 10.1 years ago by
James W. MacDonald
65k • written 10.1 years ago by
Assa Yeroslaviz
★ 1.5k
0
votes
0
replies
702
views
reordering the x-axis
10.2 years ago
Assa Yeroslaviz
★ 1.5k
0
votes
2
replies
1.2k
views
DAVIDQuery
Clustering
affy
Clustering
affy
updated 10.3 years ago by
Dan Tenenbaum
★ 8.2k • written 10.3 years ago by
Assa Yeroslaviz
★ 1.5k
0
votes
1
reply
1.6k
views
estimating size factors in DESeq produces warnings
DESeq
DESeq
updated 10.3 years ago by
Simon Anders
★ 3.7k • written 10.3 years ago by
Assa Yeroslaviz
★ 1.5k
1
vote
2
replies
1.9k
views
Help needed: extracting raw intensity values from Affy
probe
affy
gcrma
probe
affy
gcrma
updated 10.4 years ago by
shweta bagewadi
▴ 20 • written 10.4 years ago by
Assa Yeroslaviz
★ 1.5k
0
votes
0
replies
812
views
pair-wise analysis of multifactorial design in DESeq
10.5 years ago
Assa Yeroslaviz
★ 1.5k
0
votes
3
replies
1.9k
views
creating a newCountDataSet from HTSeq-count
DESeq
DESeq
updated 10.6 years ago by
Wolfgang Huber
★ 13k • written 10.6 years ago by
Assa Yeroslaviz
★ 1.5k
0
votes
3
replies
967
views
RSQLite and DB problems
oligo
oligo
updated 10.6 years ago by
James W. MacDonald
65k • written 10.6 years ago by
Assa Yeroslaviz
★ 1.5k
0
votes
3
replies
1.2k
views
xps library with mouse gene 1.0 transcript arrays
Annotation
cdf
xps
Annotation
cdf
xps
updated 10.7 years ago by
cstrato
★ 3.9k • written 10.7 years ago by
Assa Yeroslaviz
★ 1.5k
0
votes
1
reply
725
views
RNA degradation plot of transcript arrays
updated 11.6 years ago by
James W. MacDonald
65k • written 11.6 years ago by
Assa Yeroslaviz
★ 1.5k
0
votes
1
reply
817
views
clustering genes in GO categories
GO
GO
updated 11.7 years ago by
Martin Morgan
25k • written 11.7 years ago by
Assa Yeroslaviz
★ 1.5k
0
votes
2
replies
1.1k
views
limma spottype
Annotation
Annotation
updated 11.8 years ago by
John linux-user
▴ 210 • written 11.8 years ago by
Assa Yeroslaviz
★ 1.5k
0
votes
6
replies
1.5k
views
Agilent arrays 2- or 1-color?
updated 11.8 years ago by
Sean Davis
21k • written 11.8 years ago by
Assa Yeroslaviz
★ 1.5k
0
votes
6
replies
918
views
pm summarization method
probe
probe
12.1 years ago
Assa Yeroslaviz
★ 1.5k
0
votes
0
replies
615
views
extract intensity values from AffyBatch
probe
probe
12.1 years ago
Assa Yeroslaviz
★ 1.5k
0
votes
5
replies
1.8k
views
biomart to a data.frame
updated 12.3 years ago by
Steve Lianoglou
★ 13k • written 12.3 years ago by
Assa Yeroslaviz
★ 1.5k
0
votes
0
replies
685
views
plot with two x-axis
12.4 years ago
Assa Yeroslaviz
★ 1.5k
147 results • Page
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