Profile Posts Awards
Show
all questions tools blogs news tutorials forum answers comments
4
votes
4
replies
1.3k
views
Replicating GO website analysis with bioconductor packages (topGO?)
topGO Gene Ontology enrichment panther.db
updated 3.6 years ago by 50k • written 3.6 years ago by ▴ 120
0
votes
1
reply
832
views
package circlize: How to extend circos plot?
circlize circos
3.8 years ago Brian Smith ▴ 120
0
votes
0
replies
1.9k
views
Comment: C: TxDb, GenomicFeatures load from GTF file (Mmul_8)
3.8 years ago Brian Smith ▴ 120
0
votes
0
replies
1.9k
views
Comment: C: TxDb, GenomicFeatures load from GTF file (Mmul_8)
3.8 years ago Brian Smith ▴ 120
0
votes
1
reply
1.9k
views
Comment: C: TxDb, GenomicFeatures load from GTF file (Mmul_8)
3.8 years ago Brian Smith ▴ 120
3
votes
6
replies
1.9k
views
TxDb, GenomicFeatures load from GTF file (Mmul_8)
TxDb GenomicFeatures
updated 3.8 years ago by 25k • written 3.8 years ago by ▴ 120
0
votes
1
reply
358
views
DESeq2: basemean count
deseq2
updated 4.2 years ago by 41k • written 4.2 years ago by ▴ 120
0
votes
0
replies
1.9k
views
Comment: C: DESeq2 namespace load failed for GenomeInfoDb
4.3 years ago Brian Smith ▴ 120
0
votes
1
reply
1.9k
views
Comment: C: DESeq2 namespace load failed for GenomeInfoDb
4.3 years ago Brian Smith ▴ 120
0
votes
1
reply
1.9k
views
Comment: C: DESeq2 namespace load failed for GenomeInfoDb
4.3 years ago Brian Smith ▴ 120
1
vote
7
replies
1.9k
views
DESeq2 namespace load failed for GenomeInfoDb
DESeq2
4.3 years ago Brian Smith ▴ 120
0
votes
1
reply
1.0k
views
TxDb basic question
txdb TxDb.Mmulatta.UCSC.rheMac8.refGene
updated 5.8 years ago by ▴ 50 • written 5.8 years ago by ▴ 120
0
votes
0
replies
817
views
Comment: C: Biostrings: "Error in .normargSEW(start, "start")"
5.9 years ago Brian Smith ▴ 120
2
votes
2
replies
817
views
Biostrings: "Error in .normargSEW(start, "start")"
Biostrings
updated 5.9 years ago by 25k • written 5.9 years ago by ▴ 120
1
vote
1
reply
930
views
genes in rhesus genome (ref. TxDb.Mmulatta.UCSC.rheMac8.refGene)
org.hs.eg.db org.mmu.eg.db
updated 6.0 years ago by 65k • written 6.0 years ago by ▴ 120
1
vote
0
replies
1.7k
views
Comment: C: RNA-Seq : zero counts
6.4 years ago Brian Smith ▴ 120
0
votes
0
replies
1.7k
views
Comment: C: RNA-Seq : zero counts
6.4 years ago Brian Smith ▴ 120
0
votes
1
reply
1.7k
views
Comment: C: RNA-Seq : zero counts
6.4 years ago Brian Smith ▴ 120
4
votes
6
replies
1.7k
views
RNA-Seq : zero counts
rnaseq bioconductor
updated 6.4 years ago by 65k • written 6.4 years ago by ▴ 120
0
votes
1
reply
1.7k
views
Epigenetic clock (Horvath): package?
methylation illimina 450k methylation epigenetics minfi
updated 7.1 years ago by ▴ 60 • written 7.2 years ago by ▴ 120
2
votes
2
replies
1.4k
views
SAM/siggenes: Differential gene expression analysis
SAM siggenes microarray gene expression sam
7.3 years ago Brian Smith ▴ 120
0
votes
0
replies
1.4k
views
Answer: A: SAM/siggenes: Differential gene expression analysis
7.3 years ago Brian Smith ▴ 120
0
votes
0
replies
1.5k
views
Answer: A: metagenomeSeq: cumNormStat normalization default
7.4 years ago Brian Smith ▴ 120
0
votes
2
replies
1.5k
views
metagenomeSeq: cumNormStat normalization default
metagenomeseq microbiome
7.4 years ago Brian Smith ▴ 120
0
votes
0
replies
4.1k
views
Comment: C: Gviz issue: crashing when AnnotationTrack( ... , just.group="above")
7.7 years ago Brian Smith ▴ 120
0
votes
1
reply
4.1k
views
Comment: C: Gviz issue: crashing when AnnotationTrack( ... , just.group="above")
7.7 years ago Brian Smith ▴ 120
0
votes
1
reply
4.1k
views
Answer: A: Gviz issue: crashing when AnnotationTrack( ... , just.group="above")
7.7 years ago Brian Smith ▴ 120
0
votes
4
replies
4.0k
views
org.Hs.eg.db - hg38 build?
org.hs.eg.db
updated 7.8 years ago by ▴ 180 • written 7.8 years ago by ▴ 120
0
votes
0
replies
1.7k
views
illumina methylationEPIC 850k array
illumina methylationEPIC 450k
8.2 years ago Brian Smith ▴ 120
1
vote
2
replies
1.7k
views
minfi: error with estimateCellCounts
minfi
8.4 years ago Brian Smith ▴ 120
0
votes
0
replies
1.7k
views
Answer: A: minfi: error with estimateCellCounts
8.4 years ago Brian Smith ▴ 120
0
votes
0
replies
1.1k
views
ChAMP: champ.runCombat error
ChAMP
8.4 years ago Brian Smith ▴ 120
0
votes
1
reply
3.3k
views
DESeq2: too many NA for pvalues?
deseq2 deseq
updated 8.4 years ago by 41k • written 8.4 years ago by ▴ 120
0
votes
1
reply
1.5k
views
RnBeads - test statistics for rnb.run.differential
RnBeads
updated 8.4 years ago by • 0 • written 8.5 years ago by ▴ 120
0
votes
1
reply
1.3k
views
phyloseq - plot_bar() error
phyloseq plot_bar()
updated 8.5 years ago by ▴ 20 • written 8.5 years ago by ▴ 120
1
vote
1
reply
1.2k
views
metagenomeSeq - normFactors
metagenomeseq
updated 8.5 years ago by ▴ 280 • written 8.5 years ago by ▴ 120
0
votes
0
replies
1.9k
views
Answer: A: RnBeads - error with 'rnb.run.differential' module
8.5 years ago Brian Smith ▴ 120
0
votes
2
replies
1.9k
views
RnBeads - error with 'rnb.run.differential' module
RnBeads illimina 450k methylation
8.5 years ago Brian Smith ▴ 120
0
votes
0
replies
1.2k
views
refFreeEWAS - extract beta values
reffreeEWAS
8.5 years ago Brian Smith ▴ 120
1
vote
1
reply
1.7k
views
RnBeads - doesn't produce pdfs
rnbeads illumina450k
updated 8.5 years ago by ▴ 10 • written 8.5 years ago by ▴ 120
0
votes
0
replies
2.3k
views
Comment: C: IlluminaHumanMethylation450k.db - error on trying to insall
8.5 years ago Brian Smith ▴ 120
0
votes
4
replies
2.3k
views
IlluminaHumanMethylation450k.db - error on trying to insall
IlluminaHumanMethylation450k.db
8.5 years ago Brian Smith ▴ 120
0
votes
1
reply
2.3k
views
Answer: A: IlluminaHumanMethylation450k.db - error on trying to insall
8.5 years ago Brian Smith ▴ 120
5
votes
2
replies
5.4k
views
org.Hs.eg.db - convert ALIAS to ENTREZID, GENENAME
org.hs.eg.db select
8.6 years ago Brian Smith ▴ 120
1
vote
0
replies
5.4k
views
Answer: A: org.Hs.eg.db - convert ALIAS to ENTREZID, GENENAME
8.6 years ago Brian Smith ▴ 120
0
votes
3
replies
3.1k
views
DMRcate: incorporating covariates to find DMRs in methylation data?
limma illimina 450k methylation DMRcate
updated 9.0 years ago by ▴ 170 • written 9.0 years ago by ▴ 120
0
votes
1
reply
1.7k
views
illumina 450k methylation: Cell composition for saliva
methylation minfi illuminahumanmethylation450k.db saliva cell composition
updated 9.1 years ago by ★ 6.5k • written 9.1 years ago by ▴ 120
0
votes
1
reply
2.2k
views
topGO: genes annotated to a significant GO term
topGO
9.2 years ago Brian Smith ▴ 120
0
votes
0
replies
2.2k
views
Answer: A: topGO: genes annotated to a significant GO term
9.2 years ago Brian Smith ▴ 120
0
votes
1
reply
5.2k
views
topGO: How to create gene2GO annotation for mouse?
topgo
updated 9.2 years ago by ▴ 610 • written 9.3 years ago by ▴ 120
66 results • Page 1 of 2
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6