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0
votes
0
replies
606
views
Coloring reads in AlignmentsTrack based on mapq
Gviz
24 months ago
Vinicius Henrique da Silva
▴ 40
0
votes
0
replies
824
views
openPrimeR can't find external dependencies
openPrimeRui
openPrimeR
5.7 years ago
Vinicius Henrique da Silva
▴ 40
2
votes
1
reply
4.7k
views
Make UpSet function display numbers above the bars
ComplexHeatmap
updated 6.0 years ago by
Zuguang Gu
▴ 290 • written 6.0 years ago by
Vinicius Henrique da Silva
▴ 40
2
votes
1
reply
1.6k
views
Create a matrix to show overlaps among multiple GRanges
r
GRanges
GenomicRanges
updated 6.0 years ago by
James W. MacDonald
68k • written 6.0 years ago by
Vinicius Henrique da Silva
▴ 40
2
votes
1
reply
974
views
Go back to GRanges used as RaggedExperiment input
RaggedExperiment
updated 6.1 years ago by
Marcel Ramos
700 • written 6.1 years ago by
Vinicius Henrique da Silva
▴ 40
2
votes
1
reply
1.5k
views
Error to rename seqlevels in Granges interactions
interactionset
granges
updated 6.6 years ago by
Aaron Lun
★ 28k • written 6.6 years ago by
Vinicius Henrique da Silva
▴ 40
0
votes
1
reply
1.6k
views
Write gds in parallel
gds
SNPRelate
BiocParallel
updated 6.8 years ago by
zhengx
▴ 30 • written 6.8 years ago by
Vinicius Henrique da Silva
▴ 40
0
votes
1
reply
1.5k
views
Comment:
C: Transform index to chromosome in DECIPHER package
7.1 years ago
Vinicius Henrique da Silva
▴ 40
1
vote
3
replies
1.5k
views
Transform index to chromosome in DECIPHER package
decipher
updated 7.1 years ago by
Erik Wright
▴ 150 • written 7.1 years ago by
Vinicius Henrique da Silva
▴ 40
0
votes
1
reply
1.2k
views
Avoid 'dStr8' format in the GDS files
SNPRelateSNP
8.1 years ago
Vinicius Henrique da Silva
▴ 40
2
votes
1
reply
1.4k
views
Conflicting results in 'overlapPermTest' function from regioneR package
regioneR
updated 8.1 years ago by
bernatgel
▴ 150 • written 8.1 years ago by
Vinicius Henrique da Silva
▴ 40
0
votes
1
reply
1.2k
views
Identify in tandem repeats with Bioconductor
biostrings
updated 8.4 years ago by
Hervé Pagès
16k • written 8.5 years ago by
Vinicius Henrique da Silva
▴ 40
0
votes
0
replies
1.0k
views
Fill the color in a graph in a reverse scale - gtrellis
gtrellis
8.6 years ago
Vinicius Henrique da Silva
▴ 40
0
votes
0
replies
906
views
Plot just one y label in gtrellis
gtrellis
8.6 years ago
Vinicius Henrique da Silva
▴ 40
0
votes
0
replies
1.8k
views
Comment:
C: DECIPHER version bug using biocLite()
8.7 years ago
Vinicius Henrique da Silva
▴ 40
1
vote
5
replies
1.8k
views
DECIPHER version bug using biocLite()
DECIPHER
8.7 years ago
Vinicius Henrique da Silva
▴ 40
2
votes
1
reply
1.3k
views
Use matchPattern for large DNAStrings
biostrings
annotate
updated 8.7 years ago by
Hervé Pagès
16k • written 8.7 years ago by
Vinicius Henrique da Silva
▴ 40
3
votes
2
replies
2.0k
views
Minimum allele frequency (MAF) from a Genomic Data Structure (GDS) file
snprelate
GWASTools
updated 8.7 years ago by
Adrienne Stilp
▴ 30 • written 8.8 years ago by
Vinicius Henrique da Silva
▴ 40
0
votes
1
reply
1.8k
views
Primer-blast with bioconductor packages
primer
blast
updated 8.8 years ago by
Hervé Pagès
16k • written 8.8 years ago by
Vinicius Henrique da Silva
▴ 40
4
votes
1
reply
1.5k
views
convert XStringViews into GRanges
GRanges
XStringViews
updated 8.8 years ago by
Michael Lawrence
★ 11k • written 8.8 years ago by
Vinicius Henrique da Silva
▴ 40
2
votes
1
reply
1.8k
views
Update bioconductor in R 3.2.4
GenomicRanges
biocupgrade
updated 8.9 years ago by
Dan Tenenbaum
★ 8.2k • written 8.9 years ago by
Vinicius Henrique da Silva
▴ 40
0
votes
1
reply
1.2k
views
Using custom expected R to estimate LRR with GWASTools
gwastools
updated 9.1 years ago by
Stephanie M. Gogarten
▴ 890 • written 9.1 years ago by
Vinicius Henrique da Silva
▴ 40
0
votes
1
reply
2.8k
views
Comment:
C: Error aroma.affymetrix [affxparser Fusion SDK exception]
9.2 years ago
Vinicius Henrique da Silva
▴ 40
0
votes
1
reply
1.4k
views
Parsing raw Axiom .CEL files using affy2sv R package
affy2sv
apt-get
updated 9.2 years ago by
James W. MacDonald
68k • written 9.2 years ago by
Vinicius Henrique da Silva
▴ 40
0
votes
1
reply
2.8k
views
Comment:
C: Error aroma.affymetrix [affxparser Fusion SDK exception]
9.2 years ago
Vinicius Henrique da Silva
▴ 40
0
votes
1
reply
2.8k
views
Comment:
C: Error aroma.affymetrix [affxparser Fusion SDK exception]
9.2 years ago
Vinicius Henrique da Silva
▴ 40
3
votes
8
replies
2.8k
views
Error aroma.affymetrix [affxparser Fusion SDK exception]
affymetrix
affxparser
updated 9.2 years ago by
Henrik Bengtsson
★ 2.4k • written 9.2 years ago by
Vinicius Henrique da Silva
▴ 40
1
vote
4
replies
2.9k
views
It is possible to use Gviz without a valid UCSC genome?
gviz
UCSC
updated 9.2 years ago by
florian.hahne@novartis.com
★ 1.6k • written 9.3 years ago by
Vinicius Henrique da Silva
▴ 40
0
votes
0
replies
3.1k
views
Modifying the legend in cnetplot function
clusterProfiler
DOSE
9.2 years ago
Vinicius Henrique da Silva
▴ 40
2
votes
1
reply
2.0k
views
Meaning of NA for LRR and BAF values estimated with GWASTools
gwastools
lrr
baf
NA
updated 9.2 years ago by
Stephanie M. Gogarten
▴ 890 • written 9.2 years ago by
Vinicius Henrique da Silva
▴ 40
0
votes
0
replies
2.9k
views
Comment:
C: It is possible to use Gviz without a valid UCSC genome?
9.3 years ago
Vinicius Henrique da Silva
▴ 40
0
votes
0
replies
2.9k
views
Comment:
C: It is possible to use Gviz without a valid UCSC genome?
9.3 years ago
Vinicius Henrique da Silva
▴ 40
1
vote
1
reply
959
views
Concatenate individual genomic intervals into populational regions
genomicranges
updated 9.3 years ago by
Hervé Pagès
16k • written 9.3 years ago by
Vinicius Henrique da Silva
▴ 40
0
votes
1
reply
1.6k
views
Comment:
C: Error: could not find function "readGVF"
9.3 years ago
Vinicius Henrique da Silva
▴ 40
1
vote
3
replies
1.6k
views
Error: could not find function "readGVF"
GVF
CNV
cnvGSA
updated 9.3 years ago by
James W. MacDonald
68k • written 9.3 years ago by
Vinicius Henrique da Silva
▴ 40
0
votes
1
reply
1.8k
views
Plotting confidence intervals with NA values
graphics
confidence interval
NA
updated 9.4 years ago by
James W. MacDonald
68k • written 9.4 years ago by
Vinicius Henrique da Silva
▴ 40
2
votes
3
replies
1.8k
views
Importing affymetrix genotype calls with GWASTools
gwastools
genotype
affymetrix microarrays
updated 9.4 years ago by
Stephanie M. Gogarten
▴ 890 • written 9.4 years ago by
Vinicius Henrique da Silva
▴ 40
2
votes
1
reply
1.2k
views
Error in importing signals with createAffyIntensityFile (GWASTools)
gwastools
software error
updated 9.4 years ago by
Stephanie M. Gogarten
▴ 890 • written 9.4 years ago by
Vinicius Henrique da Silva
▴ 40
0
votes
2
replies
2.3k
views
Error: package ‘snpMatrix’ is not available (for R version 3.2.2)
software error
installation
updated 9.5 years ago by
Dan Tenenbaum
★ 8.2k • written 9.5 years ago by
Vinicius Henrique da Silva
▴ 40
0
votes
0
replies
1.8k
views
Comment:
C: "confint" type in DataTrack function (Gviz)
9.6 years ago
Vinicius Henrique da Silva
▴ 40
1
vote
2
replies
1.8k
views
"confint" type in DataTrack function (Gviz)
Gviz
plot
confidence interval
updated 9.6 years ago by
florian.hahne@novartis.com
★ 1.6k • written 9.6 years ago by
Vinicius Henrique da Silva
▴ 40
0
votes
0
replies
2.1k
views
Comment:
C: Ploting with NA values in Gviz (generic function from plot)
9.6 years ago
Vinicius Henrique da Silva
▴ 40
2
votes
2
replies
2.1k
views
Ploting with NA values in Gviz (generic function from plot)
Gviz
Plot
NA
graph
Job
updated 9.6 years ago by
James W. MacDonald
68k • written 9.6 years ago by
Vinicius Henrique da Silva
▴ 40
0
votes
1
reply
1.2k
views
Changing the x axis size using tracks (ggbio)
ggbio
updated 10.4 years ago by
James W. MacDonald
68k • written 10.4 years ago by
Vinicius Henrique da Silva
▴ 40
0
votes
0
replies
1.2k
views
Plotting arbitrary lines at Gviz plotTracks
10.5 years ago
Vinicius Henrique da Silva
▴ 40
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