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DESeq2 output used for PCA plot on R studio
DESeq2
RSTUDIO
PCAtools
updated 26 days ago by
swbarnes2
★ 1.4k • written 28 days ago by
Aaliya
• 0
0
votes
1
reply
69
views
ERROR; return code from pthread_create() is 22
affy
updated 1 day ago by
James W. MacDonald
66k • written 3 days ago by
pickingastar
• 0
0
votes
2
replies
134
views
DECIPHER::idTaxa - broken link to download GTDB r220 (modified) trainig set
DECIPHER
5 days ago
makala
• 0
0
votes
3
replies
3.7k
views
[Mfuzz] Error in cmeans(exprs(eset)
Mfuzz
Mfuzz
updated 15 days ago by
Caio
• 0 • written 13.1 years ago by
boczniak767
▴ 720
0
votes
0
replies
20
views
Job:
Post-Doc: Development of a new method to study the distribution of the effect sizes of QTL
StatisticalMethod
Evolution
QuantitativeTrailLocus
Genetics
JobPosting
1 day ago
pierre.devillemereuil
• 0
0
votes
0
replies
97
views
News:
BioC2024 deadlines approaching
BioC2024
Bioconductor
Community
21 days ago
Maria Doyle
▴ 70
0
votes
0
replies
97
views
DiffBind: no peaks in DBA object
DiffBind
macs2
chipseq
19 days ago
yvonneh
• 0
0
votes
2
replies
72
views
How to run allelic imbalance in apeglm
apeglm
updated 1 day ago by
Michael Love
42k • written 2 days ago by
euge.eugenio
▴ 20
0
votes
4
replies
267
views
Minfi - estimatecellscount
min
minfi
updated 22 days ago by
James W. MacDonald
66k • written 7 weeks ago by
clacarion
• 0
0
votes
0
replies
58
views
GAGE results interpretation with gene-foldchange as input for cases of all-negative foldchange
GO
KEGG
gage
pathview
6 days ago
danalvoronov
▴ 10
0
votes
1
reply
726
views
How to arrange multiple plots into one page in NOISeq?
noiseq
RNA-seq
quality control
updated 8 hours ago by
baptiste.bidon
• 0 • written 4.7 years ago by
ag1805x
▴ 80
0
votes
2
replies
1.5k
views
How to use spike-in information (sequences from another species) with DESeq2::DESeq()
DESeq2
SpikeIn
Normalization
updated 11 days ago by
maria.soler
• 0 • written 16 months ago by
kalavattam
▴ 10
0
votes
44
replies
3.2k
views
How to use bootRanges to bootstrap small RNA loci (nullranges package)
bootRanges
nullranges
updated 7 days ago by
Michael Love
42k • written 15 months ago by
Poonam
• 0
0
votes
3
replies
1.5k
views
Limma, eBayes different sample size of groups and adjustment
limma
limma
updated 21 days ago by
XW
• 0 • written 13.1 years ago by
Babara Mueller
▴ 10
0
votes
0
replies
101
views
need help with Diffbind multiple groups
DiffBind
ChIPSeqData
15 days ago
Dinesh
• 0
0
votes
0
replies
98
views
Exon-exon Junction Analysis for Variable-length Exons
Rsubread
27 days ago
Dario Strbenac
★ 1.5k
0
votes
2
replies
744
views
Help with ENmix readidat
ENmix
IlluminaHumanMethylationEPICmanifest
updated 1 day ago by
James W. MacDonald
66k • written 2.0 years ago by
Daphna
• 0
0
votes
0
replies
50
views
Difference in Contrast in DiffBind
DiffBind
6 days ago
zzrammal
• 0
0
votes
7
replies
760
views
News:
List of Deprecated Packages for Bioc3.19
Release
Devel
ExperimentData
Software
11 weeks ago • updated 28 days ago
shepherl
3.9k
0
votes
1
reply
169
views
Gene set enrichment analysis
clusterProfiler
GeneSetEnrichment
updated 8 days ago by
Guido Hooiveld
★ 4.0k • written 9 days ago by
aogunbaw
• 0
0
votes
2
replies
192
views
limma-voom: Calculate the log-fold change in gene expression within a sample
limma
RNASeq
voom
written 29 days ago by
taur.vil
• 0
0
votes
1
reply
181
views
NEED FOR NESSASORY HELP
RNASeqData
edgeR
updated 19 days ago by
Gordon Smyth
50k • written 19 days ago by
z_bahari
• 0
0
votes
0
replies
93
views
ChIPseeker peak_Profile_Heatmap color palette
ChIPseeker
5 days ago
Anton01
• 0
0
votes
0
replies
59
views
query regarding how to apply WGCNA on replicates
replicatesRNAseq
WGCNA
6 days ago
k200987
• 0
0
votes
6
replies
563
views
Numerical differences in DESeq2 output depending on different design matrix construction
DESeq2
4 days ago • updated 1 day ago
Ken C
• 0
0
votes
3
replies
307
views
log2FoldChange value is way too different when compared with counts(dds)
DESeq2
updated 20 days ago by
Michael Love
42k • written 21 days ago by
HAK
• 0
0
votes
0
replies
29
views
Processing of curatedmetagenomics
curatedMetagenomicData
1 day ago
Edward
• 0
0
votes
0
replies
64
views
ReactomeGSA for RNASeq
ReactomeGSA
BatchEffect
RNASeqData
5 days ago
Shaimaa Gamal
• 0
178 results • Page
4 of 4
Recent ...
Replies
Comment: Ensembl plants at annotationHub?
by
Daniele
• 0
Thank you so much!
Answer: recount3 problem downloading data from source sra
by
Leonardo Collado Torres
★ 1.0k
Hi, I wasn't able to reproduce the issue on both bioc 3.19 (current release version) and 3.18 (closer to your session info). My guess is…
Answer: Running ENmix with mouse methylation manifest: readidat error - Error in readman
by
minardsmitha
▴ 10
Well it turns out there is a typo in the manifest file name. This particular issue is resolved by correcting the typo. A new error now …
Answer: Documenting resources in an `ExperimentHub` package?
by
James W. MacDonald
66k
The easiest way to do that IMO is to use emacs/ESS (or I believe there is some newfangled thing called RStudio? Not personally familiar, bu…
Comment: ChAMP installation issue
by
shepherl
3.9k
We are still waiting for the goseq to respond to our requests but will take action next week if it is not resolved. ChAMP is currently una…
Votes
Answer: Identifying DEGs using limma - NanoString GeoMx-NGS RNA Expression Data
Comment: Ensembl plants at annotationHub?
how to control age and gender effect in expression data using DESeq2
Answer: Error retrieving ensembl gene id using biomaRt...
Comment: LRT, more than two conditions and pairwise comparisons
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bas_work
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