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4
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5.8k
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blockwiseModule crashes in the end and doesn't generate modules
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2
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364
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wgcna module preseravtion taking too long?
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0
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436
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Question about RE-agnostic mode for intact Hi-C and Micro-C normalization(HiCDCPlus)
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Ensembl site unresponsive via biomaRt
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segfault in edgeR glmQLFit
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369
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NUPOP usage
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1
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2
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487
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release
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0
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348
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PTM analysis in LIMPA
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2
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News: Upcoming Ensembl API and data access changes - new blog post available
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0
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2
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problem reading bam files into nucleR
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0
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0
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14
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Spam: Career Growth After CCNP Certification Training: Roles, Salaries & Opportunities
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Spam: Career Growth After CCNP Certification Training: Roles, Salaries & Opportunities
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Spam: Career Growth After CCNP Certification Training: Roles, Salaries & Opportunities
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Highly similar RNA-seq samples in PCA - pooling or technical duplication?
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two questions about limma
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Question about DESeq2 Design for Paired Treatment Study
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458
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PFAM formats changed - is it still possible to use this with ISA?
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0
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3
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413
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DECIPHER DesignProbes unable to design FISH-probes
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2
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p.adjust BH Question
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1
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4
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609
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Large logFC but somewhat high FDR
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3 months ago JKim • 0
0
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reply
411
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Job: Bioinformatician at the Lausanne University Hospital
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665
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upstream git branches of bioc-release
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0
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1
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4
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How can I correctly use phyloseq with Docker?
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Boolean Gate Combination for Any 2 Positive Events in flowWorkspace
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Install old version of DESeq2
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509
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Guidance Requested on GCN Network Analysis and Module Enrichment in R
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2
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ORFik: spliced 5utr regions
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BiocManager::install() doesn't work
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Results with PON give more variants
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499
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Empty boxes in treemap plot rrvgo package
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1
reply
385
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CRISPRSeek Question: changing weight and gRNA.size causes error
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Feedback needed on new user-friendly BED file tool
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433
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sigDF object in sesame
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Create consensusMatrix for codon bases
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11
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Using DESeq2 on single cell RNA Seq data of same cell type but different conditions that were pseudo bulked
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394
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Finding duplicated entries in GRangesList
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0
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2
replies
459
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DESeq2 on non-RNASeq counts data
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0
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replies
656
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After running samtools, the featureCounts command crashed.
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0
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372
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mzR-Rcpp compiler version issue
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0
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reply
654
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Must I do pseudobulk analysis on Cell Surface Protein Labeling data of Single Cell RNA Sequencing
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updated 3 months ago by ★ 4.0k • written 3 months ago by • 0
1,000 results • Page 3 of 20
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Comment: tximeta cannot open annotation gtf? by Michael Love 43k
Yes, so this is the same type of error you would get if you tried to assemble a *SummarizedExperiment* manually with tximport + GTF process…
Answer: tximeta cannot open annotation gtf? by ATpoint ★ 5.0k
> Timeout of 60 seconds was reached You have to increase the default timeout limits for downloads, `options(timeout=3600)`. GENCODE serve…
Answer: GSEA error by James W. MacDonald 68k
At a very high level, the way non-model organisms are annotated is by using blast to find orthologs in other species that are well annotate…
Comment: Unable to find ENTREZ IDs by Adithi • 0
Hi James, Thank you so much for your reply. My main goal is to find ortholog genes from chinese hamster gene symbols to mouse gene symbols…
Comment: Unable to find ENTREZ IDs by Adithi • 0
Hi James, Thank you so much for your reply. My main goal is to find ortholog genes from chinese hamster gene symbols to mouse gene symbols…
Votes
Answer: GSEA error
Answer: OrgDb for maize
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
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