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Job: Postdoctoral Fellow (Computational Biology / Bioinformatics) - Neuroepigenetics (MSCA PF / EMBO)
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updated 25 days ago by • 0 • written 28 days ago by • 0
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News: The Call for Abstracts for BioC2026 is open!
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3
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Confirm that OpenStats will not be archived (pryr dependency)
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15
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20
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Spam: PokeChill
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Tutorial: [LIBD rstats club] Bioconductor overview
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msmsTests, inconsistent sign between lFC.Av and LogFC
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4 weeks ago Ben • 0
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DESeq2 for 16S rRNA Analysis
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3
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ChAMP trouble reading csv file
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5
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310
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Lowly expressed genes reported as significant when using lfcThreshold in DESeq
RNASeq DESeq2 DifferentialExpression
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2
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Array weights in dpcDE
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Changing multiple display parameters of a specific exon in GeneRegionTrack
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Are individual-mouse-based statistics possible in CellChat?
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limpa analysis advice
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Incosistencies in buildSNNGraph() function
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A problem occurs when running the monocle2
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limpa-blank normalization and Spectronaut's PTM stoichiometry
limpa
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7 weeks ago • updated 6 weeks ago mohammedtoufiq91 ▴ 10
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207
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Development of MSstat workflow to analyze DIA time series data
MSstats
updated 7 weeks ago by 53k • written 7 weeks ago by • 0
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0
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400
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MSstatsPTM-SpectronauttoMSstatsPTMFormat-failing with TAIR10 Locus Tags: Issue with UniProt-centric protein ID parsing
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Confounded design, batch effect correction (edgeR)
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4
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Clarification on counting in Rsubread (featureCounts)
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410
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Job: Open Positions for Doctoral Researchers in Molecular Medicine
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506
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ChAMP pipeline error (champ.import)
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2
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480
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Combining two proteomics datasets with limpa
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Job: Jobs at Ensembl
ensembldb
updated 23 days ago by • 0 • written 8 weeks ago by ▴ 30
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Spam: Is there a way to map Excel fields to VCF contacts for accurate conversion?
ComputationalChemistry Technology Software Website
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Job: Job:Computational Biologist position at the University of Alabama at Birmingham
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8 weeks ago lianov • 0
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please provide a BibTeX citation for "Advanced Single-Cell Analysis with Bioconductor"
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2
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4
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Converting Probe IDs to HGNC symbols
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Guitar R package requires update due to dependency GenomicFeatures
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ATACseq rudimentary questions
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9 weeks ago • updated 8 weeks ago 4747 • 0
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2
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How to install packages such as TCGAbiolinks, SumarizedExperiment?
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Answer: tximeta cannot open annotation gtf? by ATpoint ★ 5.0k
> Timeout of 60 seconds was reached You have to increase the default timeout limits for downloads, `options(timeout=3600)`. GENCODE serve…
Answer: GSEA error by James W. MacDonald 68k
At a very high level, the way non-model organisms are annotated is by using blast to find orthologs in other species that are well annotate…
Comment: Unable to find ENTREZ IDs by Adithi • 0
Hi James, Thank you so much for your reply. My main goal is to find ortholog genes from chinese hamster gene symbols to mouse gene symbols…
Comment: Unable to find ENTREZ IDs by Adithi • 0
Hi James, Thank you so much for your reply. My main goal is to find ortholog genes from chinese hamster gene symbols to mouse gene symbols…
Answer: Unable to find ENTREZ IDs by James W. MacDonald 68k
Those are the 'symbols', and are a concatenation of LOC and the NCBI Gene ID (what used to be called an Entrez Gene ID). As an example:http…
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Answer: GSEA error
Answer: OrgDb for maize
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
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