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14 hours ago
Frances Turner
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Bioconductor Seminar Series - Dec 2: Deep-learning Gene Perturbation Effect Prediction
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9 months ago
info
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shepherl
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GSEA in R/Bioconductor course
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written 10 months ago by
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EuroBioC2025: Abstract Submissions Open!
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10 months ago
Maria Doyle
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11 months ago
Maria Doyle
▴ 110
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428
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11 months ago
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11 months ago
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11 months ago
Maria Doyle
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927
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updated 8 months ago by
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• 0 • written 16 months ago by
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updated 12 weeks ago by
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• 0 • written 16 months ago by
Maria Doyle
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updated 7 months ago by
Ray
• 0 • written 22 months ago by
Maria Doyle
▴ 110
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5
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News:
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written 23 months ago by
Maria Doyle
▴ 110
2
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2
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766
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News:
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written 24 months ago by
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written 2.7 years ago by
Maria Doyle
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written 2.9 years ago by
Maria Doyle
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written 3.2 years ago by
Maria Doyle
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Comment: Clarification on counting in Rsubread (featureCounts)
by
Gordon Smyth
53k
Have you told featureCounts to do strand-specific counting? As pointed out by Frances Turner, you can lose reads if they overlap the gene …
Answer: Clarification on counting in Rsubread (featureCounts)
by
Frances Turner
▴ 10
You should look at the summary files produced by feature counts. This gives a breakdown of what happened to reads that were not assigned. Y…
Comment: Incosistencies in buildSNNGraph() function
by
ATpoint
★ 5.0k
Just played with this a bit and I think it comes down to not having a fixed seed before running the leiden thingy. Same goes for PCA and UM…
Answer: Incosistencies in buildSNNGraph() function
by
Aaron Lun
★ 29k
The most obvious thing that comes to mind is the RNG seed. `cluster_leiden()` does some random number generation, somewhere deep in the **i…
Comment: Opportunity to host EuroBioC2026 Preconference workshops!
by
TikTsokaas33ocissalpc
• 0
Thank you for sharing the EuroBioC2026 workshop opportunity. I m interested in hosting a hands on session teaching reproducible data analys…
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Answer: Clarification on counting in Rsubread (featureCounts)
C: RNA-Seq analysis with Limma/edgeR, time course experiment, aberrant results
C: RNA-Seq analysis with Limma/edgeR, time course experiment, aberrant results
A: Conversion from counts to FPKM
Answer: Incosistencies in buildSNNGraph() function
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