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22 days ago
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25 days ago
Wolfgang Huber
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Maria Doyle
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11 weeks ago
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8 months ago
Maria Doyle
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9 months ago
Maria Doyle
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12 months ago • updated 11 months ago
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3.9k
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News:
May 31st is the last day to nominate for Bioc2023 Awards!
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11 months ago
shepherl
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11 months ago
Maria Doyle
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12 months ago • updated 11 months ago
shepherl
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Answer: limma Intercept vs No-intercept models completely changing DMR results?
by
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I'll add a little bit of general advice to James' answer. You seem to have the misunderstanding that you can change the design matrix but …
Answer: package goseq seems to be not available on the latest version of R
by
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It is true that goseq isn't available for Bioc 3.19. That is because goseq depends on txbmaker, which is itself not yet available for Bioc…
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This part: ``` design_intercept <- model.matrix(~Alt+Sex+Age+PC1, data=targets_Sherpa) colnames(design_intercept) <- c("AltSHP_LA","Al…
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by
Kim
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Thank you Tim, this is a great help in getting me started!
Comment: Too many significant genes when integrating gtex and tcga
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41k
Yes, this was one of the aspects we highlighted in the 2014 paper, and it's also in the workflow. Check these places first. Also take a st…
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Answer: limma Intercept vs No-intercept models completely changing DMR results?
Answer: CombineArrays for EPIC and EPIC V2
Answer: Too many significant genes when integrating gtex and tcga
Comment: Too many significant genes when integrating gtex and tcga
A: Print Differentially Expressed Exons From Dexseq Results
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