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Answer: lfcShrink and alpha value by Michael Love 43k
The code I sent just tells summary what threshold to use when printing the table.
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Thank you for your answer. It is an interesting solution. I've never though of modifying the design matrix itself - I always try to have a …
Comment: pathview - multiple states by Guido Hooiveld ★ 4.1k
According to the the help page of `pathview` (type `?pathview`) the input should be `either vector (single sample) or a matrix-like data (m…
Comment: scuttle::perFeatureQCMetrics runs very slow for big scRNA-seq data by Aaron Lun ★ 28k
You can examine the structure of a `DelayedMatrix` by calling the `showtree()` function. For example: ``` library(scRNAseq) X <- fetchData…
Comment: lfcShrink and alpha value by cropero • 0
Thank you so much! Would that be equivalent to perform `res <- results(dds, contrast = c("conditions", "wild_type_114_2_no_carbon", "wild_t…
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